Table 3. Proteins reduced on chromatin in the absence of APC, but with unchanged dynamics of chromatin association.

name	ID	description	max pept Nr	fc down	fc down set 1	fc down set 2	P
wls-b	148228006	protein wntless homolog B precursor	4, 1/3, 2	2.83	1.24	3.39	0.47
dctn1	111305480	dctn1 protein	12, 9/1, 2	1.91	1.62	1.27	0.73
alg8	147901994	asparagine-linked glycosylation 8,alpha-1,3-glucosyltransferase homolog	13, 5/4, 3	1.88	2.44	1.09	0.93
rpn2	148235541	ribophorin II	17, 11/4, 3	1.87	2.1	1.1	0.95
cenpe	147900710	centromere protein E, 312 kDa	80, 44/5, 2	1.85	1.46	2.27	0.81

Data were processed as in table 2. The fold change decrease (“fc down”) was calculated as a ratio between control and APC-depleted total values calculated as above; the fold change down for individual sets, calculated from raw data are also given. Only data with a reproducible decrease in the total signal in the absence of APC are presented. The positive Pearson coefficient (P) (P>0.3) given in the last row confirms similarity in dynamics of these proteins between APC-deficient and control samples.