Table 4. Ubp5p-dependent gene expressions at 37°C.

Category	Gene ID*	Fold change ubp5?/WT	P value	Functional annotation
Carbohydrate/amino acidmetabolism	CNI00320	1.99	1.10E-07	Glyceraldehyde 3-phosphate dehydrogenase
	CNE03150	1.53	7.60E-06	Cellulase (167.m03461)
	CNA00470	1.52	1.10E-09	Fructose-bisphosphatase (181.m07830)
	CNAG_02225	1.41	1.60E-08	Cellulase
	CNF03760	1.40	2.30E-07	Carboxypeptidase C
	CNN00510	1.37	2.50E-08	L-fucose permease
	CNG01150	0.73	4.70E-06	Spermidine synthase
	CNAG_01118	0.72	5.40E-08	Amino acid transporter
	CNA08130	0.72	2.90E-08	2-hydroxyacid dehydrogenase
	CNL04780	0.64	1.90E-08	Carbonic anhydrase protein
	CNJ00690	0.59	1.20E-09	Uracil permease
Nucleotide metabolism	CNC04630	0.71	1.80E-06	Thymidylate kinase
	CNE00200	0.69	9.80E-08	Transferase purine nucleotide biosynthesis
	CNJ01230	0.64	1.30E-09	Thymidylate synthase
RNA processing and modification	CNF00090	0.70	7.00E-11	rRNA modification-related protein
	CNE01090	0.69	6.50E-09	rRNA primary transcript binding protein
	CNH02690	0.68	7.30E-08	ATP-dependent rRNA helicase (Spb4p)
	CNG03270	0.66	2.70E-07	RNA-3-phosphate cyclase rRNA processing
	CNJ00110	0.65	4.70E-08	rRNA (adenine-N6 ,N6-)-dimethyltransferase
Ribosome synthesis	CNC05320	0.66	1.00E-10	Mitochondrial 60 s ribosomal protein l38 (yml38)
	CNB01260	0.64	4.30E-09	Ribosomal large subunit biogenesis-related protein
	CNB05550	0.62	5.00E-11	Cytosolic large ribosomal subunit protein
Cell division and cell cycle	CNAG_06092	1.30	3.70E-07	Cyclin
	CNK02970	0.72	4.00E-06	Mitotic chromosome condensation-related protein
	CNAG_02267	0.72	2.00E-10	Spindle assembly checkpoint protein SLDB
	CNAG_00259	0.68	2.00E-10	Bud site selection protein
Cell wall/membrane organization	CNE01950	1.47	2.20E-08	UDP-N-acetylglucosamine transporter
	CNA06800	0.72	1.20E-07	CAP64 gene product (Cas31p)
	CNC06200	0.70	4.90E-09	Ergosterol biosynthesis-related protein
Transcriptional regulation	CNAG_04457	2.02	1.30E-07	Transcription factor activity
	CNAG_02877	1.60	2.40E-07	Sequence-specific DNA binding transcription factor activity
	CNC02990	0.63	8.10E-08	DNA-directed RNA polymerase
	CNAG_06916	0.60	1.80E-09	Zinc finger protein
Stress response	CNAG_03765	1.37	6.00E-09	Trehalose-phosphatase (Tps2p)
	CNA07730	1.34	2.30E-09	Multidrug resistance protein 1
	CNAG_01893	1.33	2.60E-07	Glutathione S-transferase 3 (Gst3p)
	CNB02790	1.30	5.60E-09	Alpha,alpha-trehalase
	CNM02420	0.73	5.82E-01	Acidic laccase (Fet3p/5p)
	CNF02230	0.57	2.00E-11	Glutathione S-transferase 6 (Gst6p)

^*The table does not list those differential genes overlapped with Table 3.