Table 2.
Comparison of CG4673 Gene of D. buzzatii (EB breakpoint region) with D. mojavensis and D. melanogastera.
|
Dbuz/Dmoj |
Dbuz/Dmel |
||||||||
|---|---|---|---|---|---|---|---|---|---|
| Region | Dbuz (base pairs) | Dmoj (base pairs) | Dmel (base pairs) | Identity (%) | Ka/Ks | ω | Identity (%) | Ka/Ks | ω |
| RA transcript | 3,015 | 11,726 | 12,290 | — | — | — | — | — | — |
| RA CDSb | 1,968 | 1,962 | 1,959 | 90.6 | 0.0235/0.4218 | 0.0557 | 79.6 | 0.0723/1.4327 | 0.0505 |
| RB/RD transcriptc | 3,701 | 12,418 | 13,317 | — | — | — | — | — | — |
| RB/RD CDS | 1,881 | 1,875 | 1,875 | 90.0 | 0.0259/0.4363 | 0.0593 | 78.9 | 0.0728/1.4874 | 0.0489 |
a In D. melanogaster, CG4673 encodes three strongly supported transcripts, RA, RB, and RD. In D. mojavensis, only RA transcript is annotated; however, a detailed analysis of this region allowed us to annotate the other two transcripts.
b Not including UTRs.
c Transcripts RB and RD differ in the UTR regions.