Table 1.

Comparing our method with HPeak (bin size 25 bp).

FDR	Peak/Threshold Ratio	# of Regions	Ratio of Overlap with HPeak (%)
0.05	5	108393	100
0.05	10	35243	100
0.03	9	24213	100
0.03	10	20421	93.09
0.02	8	21699	98.11
0.02	10	15612	80.90
0.01	6	22859	100
0.01	6.5	20358	96.65
0.01	8	15302	80.01