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. 2012 Jun;19(6):606–618. doi: 10.1089/cmb.2012.0027

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Copyright 2012, Mary Ann Liebert, Inc.

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FIG. 3. — (A) The normalization factor as a function of the simulation time step . (Green line)N as observed in the RBM method and (blue line) N as observed in the traditional BD scheme. (B) The probability of accepting a reaction upon the collision between two particles as a function of the time step used in the simulation. The function differs dramatically between the traditional BD approach and our RBM method. Most importantly, the values of remain at relatively low values over a wide range of time steps, while in the traditional BD scheme increases with the length of the time step. Simulation parameters are the same as Figure 2.

Inline graphic — (A) The normalization factor as a function of the simulation time step . (Green line)N as observed in the RBM method and (blue line) N as observed in the traditional BD scheme. (B) The probability of accepting a reaction upon the collision between two particles as a function of the time step used in the simulation. The function differs dramatically between the traditional BD approach and our RBM method. Most importantly, the values of remain at relatively low values over a wide range of time steps, while in the traditional BD scheme increases with the length of the time step. Simulation parameters are the same as Figure 2.