Table 3.
List of some defense related GDTA in canker versus healthy stem in American chestnut.
| Contig name | Ath. BH1 | # ACC Reads2 | # ACHS Reads3 | log2norm | Function |
|---|---|---|---|---|---|
| AC454_contig77_v3 | AT1G15950.1 | 58 | 34 | 3.19 | cinnamoyl CoA reductase. |
| AC454_contig559_v3 | AT1G65060.1 | 17 | 0 | 7.50 | isoform of 4-coumarate:CoA ligase (4 cl) |
| AC454_contig968_v3 | AT2G30490.1 | 11 | 5 | 3.55 | cinnamate-4-hydroxylase. |
| AC454_contig15349_v3 | AT3G12500.1 | 49 | 8 | 5.03 | basic chitinase involved |
| AC454_contig1339_v3 | AT1G74100.1 | 6 | 1 | 5.00 | desulfoglucosinolate sulfotransferase |
| AC454_contig17741_v3 | AT3G10920.1 | 15 | 25 | 1.68 | manganese superoxide dismutase (MSD1) |
| AC454_contig14459_v3 | AT2G35690.1 | 59 | 72 | 2.13 | acyl-CoA oxidase. Involved in jasmonate biosynthesis. |
| AC454_contig2314_v3 | AT1G15520.1 | 10 | 1 | 5.74 | abc transporter family |
| AC454_contig15056_v3 | AT2G41430.1 | 25 | 69 | 0.95 | hydrophilic protein lacking Cys residues |
| AC454_contig8521_v3 | AT3G60160.1 | 6 | 3 | 3.42 | member of MRP subfamily |
| AC454_contig38515_v3 | AT1G80600.1 | 6 | 0 | 6.00 | HopW1-1-Interacting protein 1 (WIN1). |
| AC454_contig1398_v3 | AT2G23620.1 | 9 | 3 | 4.00 | carboxylesterase/methyl jasmonate esterase |
| AC454_contig27747_v3 | AT5G60600.1 | 30 | 65 | 1.30 | hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate synthase |
| AC454_contig4243_v3 | AT4G11260.1 | 43 | 142 | 0.69 | SCF(TIR1) mediated degradation of Aux/IAA proteins |
| AC454_contig117_v3 | AT4G37980.1 | 63 | 0 | 9.39 | oxidoreductase activity |
| AC454_contig12110_v3 | AT3G60190.1 | 8 | 5 | 3.09 | Arabidopsis dynamin-related protein 1E, DRP1E |
| AC454_contig1301_v3 | AT2G26560.1 | 6 | 6 | 2.42 | lipid acyl hydrolase with wide substrate specificity |
| AC454_contig2362_v3 | AT3G04720.1 | 6 | 0 | 6.00 | similar to the antifungal chitin-binding protein hevein |
| AC454_contig575_v3 | AT1G73260.1 | 6 | 0 | 6.00 | trypsin inhibitor |
| AC454_contig33210_v3 | AT3G20600.1 | 6 | 4 | 3.00 | non-race specific resistance to bacterial and fungal pathogens |
| AC454_contig22127_v3 | AT4G37870.1 | 39 | 101 | 1.04 | putative phosphoenolpyruvate carboxykinase |
| AC454_contig9688_v3 | AT4G23130.1 | 22 | 25 | 2.23 | receptor-like protein kinase. |
| AC454_contig18720_v3 | AT4G09320.1 | 39 | 32 | 2.70 | nucleoside diphosphate kinase type 1 (NDPK1) gene |
| AC454_contig7385_v3 | AT4G29040.1 | 24 | 28 | 2.19 | 26S proteasome AAA- ATPase subunit RPT2a (RPT2a) |
| AC454_contig5037_v3 | AT2G18960.1 | 8 | 5 | 3.09 | plasma membrane proton ATPase |
| AC454_contig38744_v3 | ATCG00120.1 | 5 | 2 | 3.74 | ATPase alpha subunit |
| AC454_contig16366_v3 | AT1G33970.2 | 6 | 4 | 3.00 | avirulence-responsive protein |
| AC454_contig14337_v3 | AT1G35720.1 | 31 | 78 | 1.08 | a member of the annexin gene family |
| AC454_contig28989_v3 | AT4G11600.1 | 43 | 23 | 3.32 | glutathione peroxidase. |
| AC454_contig1677_v3 | AT1G45249.1 | 5 | 1 | 4.74 | Leucine zipper transcription factor |
| AC454_contig1141_v3 | AT3G11410.1 | 4 | 1 | 4.42 | protein phosphatase 2 C |
| AC454_contig6419_v3 | AT1G69530.1 | 56 | 35 | 3.09 | Member of Alpha-expansin Gene Family |
| AC454_contig1070_v3 | AT4G37990.1 | 5 | 1 | 4.74 | alcohol:NADP + oxidoreduct ase |
| AC454_contig12900_v3 | AT1G04410.1 | 48 | 59 | 2.12 | malate dehydrogenase, cytosolic, putative. |
| AC454_contig2256_v3 | AT4G16260.1 | 6 | 4 | 3.00 | catalytic/cation binding /hydrolase |
| AC454_contig1025_v3 | AT3G57240.1 | 24 | 0 | 8.00 | glycosyl hydrolase family 17 |
| AC454_contig4431_v3 | AT3G25070.1 | 4 | 2 | 3.42 | R protein complex |
| AC454_contig2340_v3 | AT5G48485.1 | 20 | 31 | 1.78 | putative apoplastic lipid transfer protein |
| AC454_contig6410_v3 | AT1G20030.1 | 27 | 10 | 3.85 | pathogenesis-related thaumatin family protein |
| AC454_contig18835_v3 | AT4G38660.2 | 5 | 3 | 3.15 | thaumatin, putative |
| AC454_contig3796_v3 | AT5G47390.1 | 19 | 48 | 1.08 | myb family transcription factor |
| AC454_contig23403_v3 | AT5G35620.1 | 14 | 15 | 2.32 | Cap-binding protein |
1, Ath. BH: Arabidopsis best hit; 2, # ACC Reads: number of reads in American chestnut canker libraries; 3, # ACHS Reads: number of reads in American chestnut healthy stem libraries