Table 2.

Normalized overlap volume matrix of the four crystal cluster representatives for HIV, the four MD cluster representative s for HIV-1 protease and the four REMD cluster representatives for HIV-1 protease 310 K. Cross normalized overlap volumes between the crystal, MD and REMD shapes shaded green.

Crystal
	1EBZ	1HVS	1XL2	3AID
1EBZ	1.00	0.56	0.35	0.39
1HVS	0.56	1.00	0.38	0.40
1XL2	0.35	0.38	1.00	0.37
3AID	0.39	0.40	0.37	1.00
MD					e	f	g	h
e	0.29	0.29	0.25	0.30	1.00	0.38	0.43	0.41
f	0.38	0.33	0.32	0.30	0.38	1.00	0.42	0.46
g	0.26	0.27	0.23	0.28	0.43	0.42	1.00	0.50
h	0.29	0.29	0.25	0.27	0.41	0.46	0.50	1.00
REMD									i	j	k	l
i	0.36	0.37	0.30	0.32	0.35	0.36	0.35	0.36	1.00	0.24	0.33	0.26
j	0.24	0.22	0.24	0.26	0.34	0.37	0.38	0.34	0.24	1.00	0.37	0.35
k	0.37	0.38	0.28	0.39	0.34	0.28	0.33	0.29	0.33	0.37	1.00	0.37
l	0.15	0.19	0.24	0.24	0.27	0.34	0.29	0.30	0.26	0.35	0.37	1.00