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. Author manuscript; available in PMC: 2013 Jun 14.
Published in final edited form as: J Phys Chem B. 2012 Apr 23;116(23):6952–6959. doi: 10.1021/jp3003992

Table 3.

Normalized overlap volume matrix of the four crystal cluster representatives for CDK2, the four MD cluster representatives for CDK2 and the four REMD cluster representatives for CDK2 310 K. Cross normalized overlap volumes between the crystal, MD and REMD shapes shaded green.

Crystal
1OI9 2BHE 1GZ8 1W0X
1OI9 1.00 0.46 0.40 0.49
2BHE 0.46 1.00 0.38 0.52
1GZ8 0.40 0.38 1.00 0.50
1W0X 0.49 0.52 0.50 1.00
  MD e f g h
e 0.36 0.32 0.45 0.44 1.00 0.37 0.31 0.29
f 0.32 0.26 0.38 0.35 0.37 1.00 0.41 0.39
g 0.28 0.27 0.30 0.31 0.31 0.41 1.00 0.43
h 0.52 0.41 0.37 0.45 0.29 0.39 0.43 1.00
REMD i j k l
i 0.51 0.43 0.33 0.42 0.30 0.35 0.37 0.50 1.00 0.49 0.41 0.38
j 0.47 0.39 0.40 0.42 0.31 0.37 0.28 0.51 0.49 1.00 0.37 0.40
k 0.44 0.43 0.44 0.55 0.49 0.35 0.31 0.43 0.41 0.37 1.00 0.35
l 0.37 0.28 0.46 0.37 0.46 0.47 0.40 0.38 0.38 0.40 0.35 1.00