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The box-and-whiskers plots of 1,000 estimates of MAF, given MAF = 0.1 and the fixation index f = 0.2. The different panels in the figure are arranged so that the overall genotype missing rate (P.drop) is 0.02, 0.05, 0.1, and 0.15 (from top to bottom) and the DDR (r.drop) is 0.25, 0.5, 1, 2.5, 5, and 10 (from left to right). Below each panel, we list the mean of the 1,000 P values of the exact test for Hardy–Weinberg equilibrium for the 1,000 replications.
