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Missing patterns for one SNP.
| Observed/True | AA | ?? | AB | BB |
|---|---|---|---|---|
| AA | 1 − αHom | αHom | 0 | 0 |
| BB | 0 | αHom | 0 | 1 − αHom |
| AB | 0 | αHet | 1 − αHet | 0 |
| Probability | p1 | p2 | p3 | p4 |
| Count | n1 | n2 | n3 | n4 |
The first row lists the four possible outcomes of the observed genotypes, including the three genotypes and the missingness (??). The first column lists the three true genotypes. Each element in this table is the probability of observing some genotype given the true genotype.
