Table 2.
Restriction types (RTs) and eBURST grouping of Italian and Mexican maize-rhizosphere BCC6 isolates.
| RT | Isolate name a | RFLP type b | IIIB-specific PCR c | Alleles at the following loci |
||||
|---|---|---|---|---|---|---|---|---|
| recA | gyrB | fliC | cepIR | dsbA | ||||
| Group 1 (RT-104-complex) | ||||||||
| 20 | MexII-195 | AD | + | 14 | 9 | 5 | 4 | 2 |
| 26 (3)d | MCII-88e | AD | + | 14 | 1 | 3 | 2 | 1 |
| 34 (8)d | MVP-C2-23e | AD | - | 14 | 9 | 2 | 5 | 1 |
| 35 (2)d | MVP-C2-60e | AD | + | 14 | 8 | 2 | 5 | 1 |
| 37 (2)d | MDII-107re | AD | - | 14 | 4 | 2 | 5 | 1 |
| 40 | MVP-C2-21 | AD | - | 14 | 9 | 2 | 5 | 2 |
| 54 | MexII-989 | AD | + | 14 | 4 | 5 | 4 | 1 |
| 55 (2)d | MDIII-T18e | AD | + | 14 | 8 | 3 | 4 | 1 |
| 56 | MexII-992 | AD | - | 14 | 8 | 2 | 1 | 2 |
| 58 | MexII-1011 | AD | - | 14 | 9 | 1 | 6 | 1 |
| 59 (2)d | MexII-1005e | AD | + | 14 | 9 | 1 | 3 | 2 |
| 60 (2)d | MexII-983e | AD | - | 14 | 9 | 5 | 3 | 1 |
| 72 | MCII-179 | AD | + | 14 | 1 | 4 | 2 | 1 |
| 77 | MCII-13 | AD | + | 14 | 1 | 4 | 2 | 1 |
| 79 (2)d | MVP-C2-81e | AD | - | 14 | 9 | 2 | 3 | 1 |
| 81 (6)d | MVP-C1-16e | AD | - | 14 | 8 | 2 | 4 | 1 |
| 82 (3)d | MVP-C2-2e | AD | - | 14 | 9 | 2 | 4 | 1 |
| 84 | MDIII-P152 | AD | - | 14 | 9 | 3 | 4 | 2 |
| 85 | MDIII-P253 | AD | + | 14 | 4 | 3 | 4 | 1 |
| 86 | MDIII-P292 | AD | - | 14 | 8 | 5 | 1 | 1 |
| 87 | MVP-C1-15 | AD | - | 14 | 8 | 2 | 4 | 2 |
| 88 | MDIII-P3 | AD | + | 14 | 9 | 1 | 4 | 1 |
| 89 | MCII-23 | AD | + | 14 | 2 | 2 | 5 | 1 |
| 95 (2)d | MCII-35e | AD | + | 14 | 1 | 2 | 2 | 2 |
| 96 | MCII-134 | AD | + | 14 | 1 | 3 | 2 | 2 |
| 97 | MVP-C2-1 | AD | + | 14 | 7 | 2 | 4 | 2 |
| 98 (2)d | MDII-125re | AD | + | 14 | 10 | 2 | 4 | 1 |
| 99 | MDII-103r | AD | - | 14 | 9 | 3 | 4 | 1 |
| 104* | MDII-105r | AD | + | 14 | 4 | 2 | 4 | 1 |
| 104* | MVP-C1-79 | AD | - | 14 | 4 | 2 | 4 | 1 |
| 106 (2)d | MDII-144pe | AD | + | 14 | 4 | 2 | 4 | 2 |
| 110 | MVP-C2-84 | AD | - | 14 | 4 | 2 | 2 | 2 |
| 111 | MVP-C2-67 | AD | - | 14 | 8 | 2 | 1 | 1 |
| 113 | MDII-110r | AD | - | 14 | 10 | 2 | 5 | 1 |
| 116 | MDIII-T258 | AD | + | 14 | 4 | 2 | 1 | 1 |
| 122 | MexII-858 | AD | - | 14 | 9 | 2 | 3 | 2 |
| Singletons | ||||||||
| 19 | MexII-125 | AD | - | 14 | 9 | 6 | 1 | 1 |
| 38 | MDIII-T109 | AD | + | 14 | 9 | 4 | 1 | 2 |
| 61 | MexII-831 | AD | - | 14 | 10 | 3 | 10 | 1 |
| 76 | MCII-182 | AD | + | 14 | 1 | 5 | 6 | 1 |
a, b, c, * see legend Table 1.
d In parenthesis, no. of isolates with same RT. RT26 (MCII-88, MCIII-CA-1, MCIII-CC-35); RT34 (MVP-C2-23, MVP-C2-53, MVP-C2-57, MVP-C2-63, MVP-C2-64, MVP-C2-76, MVP-C2-82, MDII-116r); RT35 (MVP-C2-60, MVP-C2-62); RT 37 (MDII-107r, MVP-C2-58); RT55 (MDIII-T18, MexII-829); RT59 (MexII-1005, MexII-1006); RT60 (MexII-983, MexII-984); RT79 (MVP-C2-81, MVP-C2-90); RT81 (MVP-C1-16, MVP-C1-21, MVP-C1-22, MVP-C1-78, MVP-C2-18, MDIII-P41); RT82 (MVP-C2-2, MDIII-B659, MDIII-P115); RT95 (MCII-35, MCII-36); RT98 (MDII-125r, MVP-C2-121p); RT106 (MDII-144p, MDIII-T301).
e representative isolate of RT.