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. Author manuscript; available in PMC: 2013 Jun 1.
Published in final edited form as: Curr Opin Genet Dev. 2012 Mar 6;22(3):221–228. doi: 10.1016/j.gde.2012.02.004

Figure 2. Characterization of PATRR sequences and their secondary structure.

Figure 2

(A) PATRRs and their mediated translocations are listed. Deduced palindromic sequences of PATRR8, 4 and 1 are formed from translocation junction fragments. (B) Reconstructed translocation breakpoint regions for each translocation analyzed by M-fold to determine potential secondary structures [27]

(http://mfold.rna.albany.edu/?q=mfold/DNA-Folding-Form). Breakpoint regions of all PATRRs are located around 600nt.