Table 1.
List of data sets analyzed in this article
| Name | Type | Date | Institute | Fragmentsa (bp ± SD) | Reads (bp) |
|---|---|---|---|---|---|
| TCGA-13-0723 | |||||
| Normal Lib 1 | Matched Normal | 4/09 | Wash U | 154 ± 17 | 75 |
| Normal Lib 2 | Matched Normal | 4/09 | Wash U | 284 ± 38 | 75 |
| Tumor Lib 1 | Ovarian Tumor | 4/09 | Wash U | 173 ± 22 | 75 |
| Tumor Lib 2 | Ovarian Tumor | 4/09 | Wash U | 293 ± 31 | 75 |
| HCC1569 | Breast Tumor | 1/09 | UC Berkeley | 507 ± 40 | 45 |
| SRX040660 | Matched Normal | 9/10 | Broad | 172 ± 19 | 101 |
| SRX040661 | Matched Normal | 9/10 | Broad | 173 ± 19 | 101 |
| ChIP Rep 1 | Arabidopsis | 7/09 | UC Berkeley | 100b | 36 |
| ChIP Rep 2 | Arabidopsis | 7/09 | UC Berkeley | 100b | 36 |
Lib1 and Lib2 are from the same sample.
aMedian and SD of fragment length are based on paired-end mapping where available, or blibrary preparation estimates otherwise.