Abstract
There are two independent molecules in the asymmetric unit of the title compound, C6H12N2S, in which the N-methylthioformamide unit and the pyrrolidine ring mean plane are oriented at dihedral angles of 5.9 (5) and 5.9 (4)°. In the crystal, zigzag C(4) chains extending along the a axis are formed due to N—H⋯S hydrogen bonds between alternate arrangements of molecules. The chains are interlinked by C—H⋯S hydrogen bonds.
Related literature
For a related structure, see: Jiang (2009 ▶). For graph–set notation, see: Bernstein et al. (1995 ▶).
Experimental
Crystal data
C6H12N2S
M r = 144.25
Triclinic,
a = 8.616 (2) Å
b = 9.077 (2) Å
c = 10.796 (3) Å
α = 73.725 (14)°
β = 86.656 (15)°
γ = 76.177 (16)°
V = 787.0 (3) Å3
Z = 4
Mo Kα radiation
μ = 0.33 mm−1
T = 296 K
0.30 × 0.25 × 0.20 mm
Data collection
Bruker Kappa APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.957, T max = 0.966
9119 measured reflections
2699 independent reflections
1385 reflections with I > 2σ(I)
R int = 0.067
Refinement
R[F 2 > 2σ(F 2)] = 0.079
wR(F 2) = 0.262
S = 1.04
2699 reflections
165 parameters
H-atom parameters constrained
Δρmax = 0.43 e Å−3
Δρmin = −0.33 e Å−3
Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON.
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812020971/bq2355sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020971/bq2355Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812020971/bq2355Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1⋯S2i | 0.86 | 2.73 | 3.472 (5) | 145 |
| N3—H4⋯S1ii | 0.86 | 2.64 | 3.410 (5) | 150 |
| C12—H12B⋯S1iii | 0.97 | 2.84 | 3.765 (5) | 159 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
The authors acknowledge the provision of funds for the purchase of a diffractometer and encouragement by Dr Muhammad Akram Chaudhary, Vice Chancellor, University of Sargodha, Pakistan. MNU, MS, AA and IK also gratefully acknowledge the financial support provided by the Higher Education Commission (HEC), Islamabad, Pakistan.
supplementary crystallographic information
Comment
The title compound (I), (Fig. 1) has been synthesized as a derivative. The crystal structure of N-phenylpyrrolidine-1-carbothioamide related to this structure (I) has been published previously (Jiang, 2009). In (I), two molecules in the asymmetric unit are present, which differ slightly from each other geometrically. In one molecule, the N-methylthioformamide moiety A (C1/N1/C2/S1) and the pyrrolidine ring B (N2/C3–C6) are planar with r.m.s. deviation of 0.0010 Å and 0.0360 Å, respectively. The dihedral angle between A/B is 5.88 (46)°. In second molecule, the similar groups C (C7/N3/C8/S2) and D (N4/C9—C12) are also planar with r.m.s. deviation of 0.0032 Å and 0.0839 Å, respectively and the dihedral angle between C/D is 5.92 (39)°. Both molecules are interlinked through classical intramolecular H–bonding of N—H···S type (Table 1, Fig. 2) with C(4) chains (Bernstein et al., 1995) to form zigzag infinite one-dimensional polymeric chains extending along the a-axis. The polymeric chains are interlinked due to C—H···S type of H–bonding (Table 1, Fig. 2).
Experimental
A solution of pyrrolidine (0.36 g, 5.00 mmol) in CH3CN (3 ml) was added dropwise to a stirred solution of methyl isothiocyanate (0.47 ml, 5.50 mmol) in CH3CN (10 ml, anhydrous) under cooling in an ice-bath to keep the reaction temperature below 283 K. The ice-bath was removed and stirring was continued at room temperature for 2 h to furnish a yellow-colored solution. The reaction mixture was extracted with ethylacetate and subjected to column chromatography to get the colorless product in 67% yield and then recrystalized with methanol to get colorless prisms of (I).
Refinement
The H-atoms were positioned geometrically (C–H = 0.96–0.97 Å, N—H = 0.86 Å) and refined as riding with Uiso(H) = xUeq(C, N), where x = 1.5 for methyl and x = 1.2 for all other H-atoms.
Figures
Fig. 1.
View of the title compound with the atom numbering scheme. The thermal ellipsoids are drawn at the 50% probability level.
Fig. 2.
The partial packing (PLATON; Spek, 2009) which shows that molecules are interlinked to form polymeric chains along the a-axis. The H-atoms not involved in H-bonding are omitted for clarity.
Crystal data
| C6H12N2S | Z = 4 |
| Mr = 144.25 | F(000) = 312 |
| Triclinic, P1 | Dx = 1.217 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 8.616 (2) Å | Cell parameters from 1204 reflections |
| b = 9.077 (2) Å | θ = 2.4–26.0° |
| c = 10.796 (3) Å | µ = 0.33 mm−1 |
| α = 73.725 (14)° | T = 296 K |
| β = 86.656 (15)° | Prism, colorless |
| γ = 76.177 (16)° | 0.30 × 0.25 × 0.20 mm |
| V = 787.0 (3) Å3 |
Data collection
| Bruker Kappa APEXII CCD diffractometer | 2699 independent reflections |
| Radiation source: fine-focus sealed tube | 1385 reflections with I > 3σ(I) |
| Graphite monochromator | Rint = 0.067 |
| Detector resolution: 8.10 pixels mm-1 | θmax = 25.0°, θmin = 2.4° |
| ω scans | h = −10→10 |
| Absorption correction: multi-scan (SADABS; Bruker, 2005) | k = −11→11 |
| Tmin = 0.957, Tmax = 0.966 | l = −13→13 |
| 9119 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.079 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.262 | H-atom parameters constrained |
| S = 1.04 | w = 1/[σ2(Fo2) + (0.1268P)2 + 0.3916P] where P = (Fo2 + 2Fc2)/3 |
| 2699 reflections | (Δ/σ)max < 0.001 |
| 165 parameters | Δρmax = 0.43 e Å−3 |
| 0 restraints | Δρmin = −0.33 e Å−3 |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.4239 (8) | 0.1340 (7) | 0.3083 (6) | 0.101 (2) | |
| H1A | 0.3186 | 0.1209 | 0.3350 | 0.151* | |
| H1B | 0.4965 | 0.0862 | 0.3803 | 0.151* | |
| H1C | 0.4586 | 0.0844 | 0.2406 | 0.151* | |
| C2 | 0.3360 (6) | 0.3972 (7) | 0.1594 (5) | 0.0699 (14) | |
| C3 | 0.2574 (7) | 0.6685 (8) | 0.0191 (5) | 0.0913 (18) | |
| H3A | 0.2961 | 0.6484 | −0.0622 | 0.110* | |
| H3B | 0.1437 | 0.6732 | 0.0248 | 0.110* | |
| C4 | 0.2906 (12) | 0.8143 (10) | 0.0304 (9) | 0.153 (3) | |
| H4A | 0.3452 | 0.8611 | −0.0463 | 0.184* | |
| H4B | 0.1906 | 0.8885 | 0.0365 | 0.184* | |
| C5 | 0.3868 (11) | 0.7860 (8) | 0.1411 (7) | 0.123 (3) | |
| H5A | 0.3265 | 0.8361 | 0.2030 | 0.148* | |
| H5B | 0.4801 | 0.8297 | 0.1166 | 0.148* | |
| C6 | 0.4365 (7) | 0.6143 (7) | 0.1987 (5) | 0.0846 (17) | |
| H6A | 0.4123 | 0.5869 | 0.2900 | 0.101* | |
| H6B | 0.5503 | 0.5764 | 0.1880 | 0.101* | |
| C7 | 0.0612 (8) | 0.8849 (7) | 0.7020 (6) | 0.0905 (18) | |
| H7A | 0.1661 | 0.8968 | 0.7156 | 0.136* | |
| H7B | −0.0082 | 0.9109 | 0.7695 | 0.136* | |
| H7C | 0.0199 | 0.9542 | 0.6202 | 0.136* | |
| C8 | 0.1664 (6) | 0.6492 (6) | 0.6253 (4) | 0.0668 (14) | |
| C9 | 0.2534 (7) | 0.4014 (7) | 0.5615 (5) | 0.0791 (15) | |
| H9A | 0.3672 | 0.3846 | 0.5754 | 0.095* | |
| H9B | 0.2292 | 0.4497 | 0.4704 | 0.095* | |
| C10 | 0.2012 (10) | 0.2515 (9) | 0.6076 (8) | 0.126 (3) | |
| H10A | 0.1297 | 0.2437 | 0.5447 | 0.151* | |
| H10B | 0.2930 | 0.1627 | 0.6193 | 0.151* | |
| C11 | 0.1210 (11) | 0.2487 (8) | 0.7269 (7) | 0.125 (3) | |
| H11A | 0.1933 | 0.1864 | 0.7980 | 0.150* | |
| H11B | 0.0307 | 0.2009 | 0.7314 | 0.150* | |
| C12 | 0.0651 (7) | 0.4120 (6) | 0.7365 (5) | 0.0768 (15) | |
| H12A | −0.0481 | 0.4515 | 0.7165 | 0.092* | |
| H12B | 0.0846 | 0.4183 | 0.8222 | 0.092* | |
| N1 | 0.4210 (5) | 0.2971 (5) | 0.2626 (4) | 0.0771 (13) | |
| H1 | 0.4775 | 0.3348 | 0.3037 | 0.093* | |
| N2 | 0.3437 (5) | 0.5463 (6) | 0.1280 (4) | 0.0739 (12) | |
| N3 | 0.0697 (5) | 0.7250 (5) | 0.7032 (4) | 0.0746 (12) | |
| H4 | 0.0100 | 0.6740 | 0.7564 | 0.089* | |
| N4 | 0.1603 (5) | 0.5002 (5) | 0.6404 (4) | 0.0677 (11) | |
| S1 | 0.22218 (19) | 0.3304 (2) | 0.07310 (14) | 0.0932 (6) | |
| S2 | 0.28575 (19) | 0.74016 (18) | 0.51593 (13) | 0.0881 (6) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.122 (5) | 0.099 (5) | 0.083 (4) | −0.026 (4) | −0.013 (4) | −0.024 (4) |
| C2 | 0.071 (3) | 0.102 (4) | 0.040 (3) | −0.018 (3) | 0.003 (2) | −0.027 (3) |
| C3 | 0.087 (4) | 0.116 (5) | 0.060 (3) | −0.020 (4) | −0.009 (3) | −0.007 (3) |
| C4 | 0.202 (10) | 0.116 (6) | 0.127 (7) | −0.046 (6) | −0.058 (7) | 0.007 (5) |
| C5 | 0.180 (8) | 0.100 (5) | 0.095 (5) | −0.040 (5) | −0.017 (5) | −0.025 (4) |
| C6 | 0.102 (4) | 0.107 (5) | 0.052 (3) | −0.030 (4) | −0.004 (3) | −0.027 (3) |
| C7 | 0.115 (5) | 0.085 (4) | 0.078 (4) | −0.024 (3) | 0.000 (3) | −0.032 (3) |
| C8 | 0.071 (3) | 0.088 (4) | 0.042 (3) | −0.018 (3) | −0.014 (2) | −0.016 (3) |
| C9 | 0.081 (4) | 0.100 (4) | 0.061 (3) | −0.013 (3) | −0.001 (3) | −0.035 (3) |
| C10 | 0.154 (7) | 0.104 (5) | 0.136 (7) | −0.036 (5) | 0.023 (6) | −0.061 (5) |
| C11 | 0.187 (8) | 0.088 (5) | 0.109 (6) | −0.044 (5) | 0.038 (5) | −0.036 (4) |
| C12 | 0.093 (4) | 0.096 (4) | 0.050 (3) | −0.038 (3) | 0.000 (3) | −0.021 (3) |
| N1 | 0.088 (3) | 0.093 (3) | 0.054 (3) | −0.023 (3) | −0.011 (2) | −0.022 (2) |
| N2 | 0.081 (3) | 0.098 (3) | 0.041 (2) | −0.020 (3) | −0.009 (2) | −0.017 (2) |
| N3 | 0.090 (3) | 0.086 (3) | 0.055 (3) | −0.031 (2) | 0.008 (2) | −0.023 (2) |
| N4 | 0.083 (3) | 0.080 (3) | 0.045 (2) | −0.021 (2) | −0.001 (2) | −0.023 (2) |
| S1 | 0.0962 (12) | 0.1408 (15) | 0.0594 (9) | −0.0374 (10) | −0.0056 (8) | −0.0447 (9) |
| S2 | 0.0935 (12) | 0.1108 (13) | 0.0601 (9) | −0.0357 (9) | 0.0018 (8) | −0.0135 (8) |
Geometric parameters (Å, º)
| C1—N1 | 1.418 (7) | C7—H7A | 0.9600 |
| C1—H1A | 0.9600 | C7—H7B | 0.9600 |
| C1—H1B | 0.9600 | C7—H7C | 0.9600 |
| C1—H1C | 0.9600 | C8—N4 | 1.330 (6) |
| C2—N2 | 1.316 (6) | C8—N3 | 1.358 (6) |
| C2—N1 | 1.346 (6) | C8—S2 | 1.688 (5) |
| C2—S1 | 1.705 (5) | C9—N4 | 1.475 (6) |
| C3—C4 | 1.457 (9) | C9—C10 | 1.480 (9) |
| C3—N2 | 1.464 (7) | C9—H9A | 0.9700 |
| C3—H3A | 0.9700 | C9—H9B | 0.9700 |
| C3—H3B | 0.9700 | C10—C11 | 1.422 (10) |
| C4—C5 | 1.423 (10) | C10—H10A | 0.9700 |
| C4—H4A | 0.9700 | C10—H10B | 0.9700 |
| C4—H4B | 0.9700 | C11—C12 | 1.476 (8) |
| C5—C6 | 1.473 (8) | C11—H11A | 0.9700 |
| C5—H5A | 0.9700 | C11—H11B | 0.9700 |
| C5—H5B | 0.9700 | C12—N4 | 1.462 (6) |
| C6—N2 | 1.474 (6) | C12—H12A | 0.9700 |
| C6—H6A | 0.9700 | C12—H12B | 0.9700 |
| C6—H6B | 0.9700 | N1—H1 | 0.8600 |
| C7—N3 | 1.432 (6) | N3—H4 | 0.8600 |
| N1—C1—H1A | 109.5 | N4—C8—N3 | 115.8 (5) |
| N1—C1—H1B | 109.5 | N4—C8—S2 | 122.6 (4) |
| H1A—C1—H1B | 109.5 | N3—C8—S2 | 121.6 (4) |
| N1—C1—H1C | 109.5 | N4—C9—C10 | 103.7 (5) |
| H1A—C1—H1C | 109.5 | N4—C9—H9A | 111.0 |
| H1B—C1—H1C | 109.5 | C10—C9—H9A | 111.0 |
| N2—C2—N1 | 118.2 (4) | N4—C9—H9B | 111.0 |
| N2—C2—S1 | 121.6 (4) | C10—C9—H9B | 111.0 |
| N1—C2—S1 | 120.2 (4) | H9A—C9—H9B | 109.0 |
| C4—C3—N2 | 104.4 (5) | C11—C10—C9 | 108.4 (6) |
| C4—C3—H3A | 110.9 | C11—C10—H10A | 110.0 |
| N2—C3—H3A | 110.9 | C9—C10—H10A | 110.0 |
| C4—C3—H3B | 110.9 | C11—C10—H10B | 110.0 |
| N2—C3—H3B | 110.9 | C9—C10—H10B | 110.0 |
| H3A—C3—H3B | 108.9 | H10A—C10—H10B | 108.4 |
| C5—C4—C3 | 111.2 (6) | C10—C11—C12 | 108.9 (6) |
| C5—C4—H4A | 109.4 | C10—C11—H11A | 109.9 |
| C3—C4—H4A | 109.4 | C12—C11—H11A | 109.9 |
| C5—C4—H4B | 109.4 | C10—C11—H11B | 109.9 |
| C3—C4—H4B | 109.4 | C12—C11—H11B | 109.9 |
| H4A—C4—H4B | 108.0 | H11A—C11—H11B | 108.3 |
| C4—C5—C6 | 108.3 (6) | N4—C12—C11 | 103.6 (5) |
| C4—C5—H5A | 110.0 | N4—C12—H12A | 111.0 |
| C6—C5—H5A | 110.0 | C11—C12—H12A | 111.0 |
| C4—C5—H5B | 110.0 | N4—C12—H12B | 111.0 |
| C6—C5—H5B | 110.0 | C11—C12—H12B | 111.0 |
| H5A—C5—H5B | 108.4 | H12A—C12—H12B | 109.0 |
| C5—C6—N2 | 104.9 (5) | C2—N1—C1 | 124.6 (5) |
| C5—C6—H6A | 110.8 | C2—N1—H1 | 117.7 |
| N2—C6—H6A | 110.8 | C1—N1—H1 | 117.7 |
| C5—C6—H6B | 110.8 | C2—N2—C3 | 124.3 (5) |
| N2—C6—H6B | 110.8 | C2—N2—C6 | 125.1 (4) |
| H6A—C6—H6B | 108.8 | C3—N2—C6 | 110.6 (5) |
| N3—C7—H7A | 109.5 | C8—N3—C7 | 123.9 (5) |
| N3—C7—H7B | 109.5 | C8—N3—H4 | 118.0 |
| H7A—C7—H7B | 109.5 | C7—N3—H4 | 118.0 |
| N3—C7—H7C | 109.5 | C8—N4—C12 | 125.5 (4) |
| H7A—C7—H7C | 109.5 | C8—N4—C9 | 123.2 (4) |
| H7B—C7—H7C | 109.5 | C12—N4—C9 | 111.3 (4) |
| N2—C3—C4—C5 | −1.7 (10) | C4—C3—N2—C6 | −4.0 (7) |
| C3—C4—C5—C6 | 6.6 (11) | C5—C6—N2—C2 | −170.9 (6) |
| C4—C5—C6—N2 | −8.6 (8) | C5—C6—N2—C3 | 7.8 (6) |
| N4—C9—C10—C11 | −15.4 (8) | N4—C8—N3—C7 | 179.3 (5) |
| C9—C10—C11—C12 | 21.4 (10) | S2—C8—N3—C7 | −1.0 (7) |
| C10—C11—C12—N4 | −17.9 (8) | N3—C8—N4—C12 | −3.0 (7) |
| N2—C2—N1—C1 | 179.6 (5) | S2—C8—N4—C12 | 177.3 (4) |
| S1—C2—N1—C1 | −0.3 (7) | N3—C8—N4—C9 | 178.1 (4) |
| N1—C2—N2—C3 | −179.7 (5) | S2—C8—N4—C9 | −1.6 (6) |
| S1—C2—N2—C3 | 0.3 (7) | C11—C12—N4—C8 | −170.9 (5) |
| N1—C2—N2—C6 | −1.1 (8) | C11—C12—N4—C9 | 8.1 (6) |
| S1—C2—N2—C6 | 178.8 (4) | C10—C9—N4—C8 | −176.9 (5) |
| C4—C3—N2—C2 | 174.7 (6) | C10—C9—N4—C12 | 4.1 (6) |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1···S2i | 0.86 | 2.73 | 3.472 (5) | 145 |
| N3—H4···S1ii | 0.86 | 2.64 | 3.410 (5) | 150 |
| C12—H12B···S1iii | 0.97 | 2.84 | 3.765 (5) | 159 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x, −y+1, −z+1; (iii) x, y, z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BQ2355).
References
- Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555-1573.
- Bruker (2005). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
- Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
- Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
- Jiang, J.-H. (2009). Acta Cryst. E65, o52. [DOI] [PMC free article] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812020971/bq2355sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020971/bq2355Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812020971/bq2355Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


