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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 May 12;68(Pt 6):o1706. doi: 10.1107/S1600536812020971

N-Methyl­pyrrolidine-1-carbothio­amide

M Naveed Umar a, M Nawaz Tahir b,*, Mohammad Shoaib c, Akbar Ali a, Imran Khan d
PMCID: PMC3379299  PMID: 22719497

Abstract

There are two independent mol­ecules in the asymmetric unit of the title compound, C6H12N2S, in which the N-methyl­thio­formamide unit and the pyrrolidine ring mean plane are oriented at dihedral angles of 5.9 (5) and 5.9 (4)°. In the crystal, zigzag C(4) chains extending along the a axis are formed due to N—H⋯S hydrogen bonds between alternate arrangements of mol­ecules. The chains are inter­linked by C—H⋯S hydrogen bonds.

Related literature  

For a related structure, see: Jiang (2009). For graph–set notation, see: Bernstein et al. (1995).graphic file with name e-68-o1706-scheme1.jpg

Experimental  

Crystal data  

  • C6H12N2S

  • M r = 144.25

  • Triclinic, Inline graphic

  • a = 8.616 (2) Å

  • b = 9.077 (2) Å

  • c = 10.796 (3) Å

  • α = 73.725 (14)°

  • β = 86.656 (15)°

  • γ = 76.177 (16)°

  • V = 787.0 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.33 mm−1

  • T = 296 K

  • 0.30 × 0.25 × 0.20 mm

Data collection  

  • Bruker Kappa APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2005) T min = 0.957, T max = 0.966

  • 9119 measured reflections

  • 2699 independent reflections

  • 1385 reflections with I > 2σ(I)

  • R int = 0.067

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.079

  • wR(F 2) = 0.262

  • S = 1.04

  • 2699 reflections

  • 165 parameters

  • H-atom parameters constrained

  • Δρmax = 0.43 e Å−3

  • Δρmin = −0.33 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812020971/bq2355sup1.cif

e-68-o1706-sup1.cif (22.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020971/bq2355Isup2.hkl

e-68-o1706-Isup2.hkl (129.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812020971/bq2355Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯S2i 0.86 2.73 3.472 (5) 145
N3—H4⋯S1ii 0.86 2.64 3.410 (5) 150
C12—H12B⋯S1iii 0.97 2.84 3.765 (5) 159

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors acknowledge the provision of funds for the purchase of a diffractometer and encouragement by Dr Muhammad Akram Chaudhary, Vice Chancellor, University of Sargodha, Pakistan. MNU, MS, AA and IK also gratefully acknowledge the financial support provided by the Higher Education Commission (HEC), Islamabad, Pakistan.

supplementary crystallographic information

Comment

The title compound (I), (Fig. 1) has been synthesized as a derivative. The crystal structure of N-phenylpyrrolidine-1-carbothioamide related to this structure (I) has been published previously (Jiang, 2009). In (I), two molecules in the asymmetric unit are present, which differ slightly from each other geometrically. In one molecule, the N-methylthioformamide moiety A (C1/N1/C2/S1) and the pyrrolidine ring B (N2/C3–C6) are planar with r.m.s. deviation of 0.0010 Å and 0.0360 Å, respectively. The dihedral angle between A/B is 5.88 (46)°. In second molecule, the similar groups C (C7/N3/C8/S2) and D (N4/C9—C12) are also planar with r.m.s. deviation of 0.0032 Å and 0.0839 Å, respectively and the dihedral angle between C/D is 5.92 (39)°. Both molecules are interlinked through classical intramolecular H–bonding of N—H···S type (Table 1, Fig. 2) with C(4) chains (Bernstein et al., 1995) to form zigzag infinite one-dimensional polymeric chains extending along the a-axis. The polymeric chains are interlinked due to C—H···S type of H–bonding (Table 1, Fig. 2).

Experimental

A solution of pyrrolidine (0.36 g, 5.00 mmol) in CH3CN (3 ml) was added dropwise to a stirred solution of methyl isothiocyanate (0.47 ml, 5.50 mmol) in CH3CN (10 ml, anhydrous) under cooling in an ice-bath to keep the reaction temperature below 283 K. The ice-bath was removed and stirring was continued at room temperature for 2 h to furnish a yellow-colored solution. The reaction mixture was extracted with ethylacetate and subjected to column chromatography to get the colorless product in 67% yield and then recrystalized with methanol to get colorless prisms of (I).

Refinement

The H-atoms were positioned geometrically (C–H = 0.96–0.97 Å, N—H = 0.86 Å) and refined as riding with Uiso(H) = xUeq(C, N), where x = 1.5 for methyl and x = 1.2 for all other H-atoms.

Figures

Fig. 1.

Fig. 1.

View of the title compound with the atom numbering scheme. The thermal ellipsoids are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

The partial packing (PLATON; Spek, 2009) which shows that molecules are interlinked to form polymeric chains along the a-axis. The H-atoms not involved in H-bonding are omitted for clarity.

Crystal data

C6H12N2S Z = 4
Mr = 144.25 F(000) = 312
Triclinic, P1 Dx = 1.217 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 8.616 (2) Å Cell parameters from 1204 reflections
b = 9.077 (2) Å θ = 2.4–26.0°
c = 10.796 (3) Å µ = 0.33 mm1
α = 73.725 (14)° T = 296 K
β = 86.656 (15)° Prism, colorless
γ = 76.177 (16)° 0.30 × 0.25 × 0.20 mm
V = 787.0 (3) Å3

Data collection

Bruker Kappa APEXII CCD diffractometer 2699 independent reflections
Radiation source: fine-focus sealed tube 1385 reflections with I > 3σ(I)
Graphite monochromator Rint = 0.067
Detector resolution: 8.10 pixels mm-1 θmax = 25.0°, θmin = 2.4°
ω scans h = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2005) k = −11→11
Tmin = 0.957, Tmax = 0.966 l = −13→13
9119 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.079 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.262 H-atom parameters constrained
S = 1.04 w = 1/[σ2(Fo2) + (0.1268P)2 + 0.3916P] where P = (Fo2 + 2Fc2)/3
2699 reflections (Δ/σ)max < 0.001
165 parameters Δρmax = 0.43 e Å3
0 restraints Δρmin = −0.33 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.4239 (8) 0.1340 (7) 0.3083 (6) 0.101 (2)
H1A 0.3186 0.1209 0.3350 0.151*
H1B 0.4965 0.0862 0.3803 0.151*
H1C 0.4586 0.0844 0.2406 0.151*
C2 0.3360 (6) 0.3972 (7) 0.1594 (5) 0.0699 (14)
C3 0.2574 (7) 0.6685 (8) 0.0191 (5) 0.0913 (18)
H3A 0.2961 0.6484 −0.0622 0.110*
H3B 0.1437 0.6732 0.0248 0.110*
C4 0.2906 (12) 0.8143 (10) 0.0304 (9) 0.153 (3)
H4A 0.3452 0.8611 −0.0463 0.184*
H4B 0.1906 0.8885 0.0365 0.184*
C5 0.3868 (11) 0.7860 (8) 0.1411 (7) 0.123 (3)
H5A 0.3265 0.8361 0.2030 0.148*
H5B 0.4801 0.8297 0.1166 0.148*
C6 0.4365 (7) 0.6143 (7) 0.1987 (5) 0.0846 (17)
H6A 0.4123 0.5869 0.2900 0.101*
H6B 0.5503 0.5764 0.1880 0.101*
C7 0.0612 (8) 0.8849 (7) 0.7020 (6) 0.0905 (18)
H7A 0.1661 0.8968 0.7156 0.136*
H7B −0.0082 0.9109 0.7695 0.136*
H7C 0.0199 0.9542 0.6202 0.136*
C8 0.1664 (6) 0.6492 (6) 0.6253 (4) 0.0668 (14)
C9 0.2534 (7) 0.4014 (7) 0.5615 (5) 0.0791 (15)
H9A 0.3672 0.3846 0.5754 0.095*
H9B 0.2292 0.4497 0.4704 0.095*
C10 0.2012 (10) 0.2515 (9) 0.6076 (8) 0.126 (3)
H10A 0.1297 0.2437 0.5447 0.151*
H10B 0.2930 0.1627 0.6193 0.151*
C11 0.1210 (11) 0.2487 (8) 0.7269 (7) 0.125 (3)
H11A 0.1933 0.1864 0.7980 0.150*
H11B 0.0307 0.2009 0.7314 0.150*
C12 0.0651 (7) 0.4120 (6) 0.7365 (5) 0.0768 (15)
H12A −0.0481 0.4515 0.7165 0.092*
H12B 0.0846 0.4183 0.8222 0.092*
N1 0.4210 (5) 0.2971 (5) 0.2626 (4) 0.0771 (13)
H1 0.4775 0.3348 0.3037 0.093*
N2 0.3437 (5) 0.5463 (6) 0.1280 (4) 0.0739 (12)
N3 0.0697 (5) 0.7250 (5) 0.7032 (4) 0.0746 (12)
H4 0.0100 0.6740 0.7564 0.089*
N4 0.1603 (5) 0.5002 (5) 0.6404 (4) 0.0677 (11)
S1 0.22218 (19) 0.3304 (2) 0.07310 (14) 0.0932 (6)
S2 0.28575 (19) 0.74016 (18) 0.51593 (13) 0.0881 (6)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.122 (5) 0.099 (5) 0.083 (4) −0.026 (4) −0.013 (4) −0.024 (4)
C2 0.071 (3) 0.102 (4) 0.040 (3) −0.018 (3) 0.003 (2) −0.027 (3)
C3 0.087 (4) 0.116 (5) 0.060 (3) −0.020 (4) −0.009 (3) −0.007 (3)
C4 0.202 (10) 0.116 (6) 0.127 (7) −0.046 (6) −0.058 (7) 0.007 (5)
C5 0.180 (8) 0.100 (5) 0.095 (5) −0.040 (5) −0.017 (5) −0.025 (4)
C6 0.102 (4) 0.107 (5) 0.052 (3) −0.030 (4) −0.004 (3) −0.027 (3)
C7 0.115 (5) 0.085 (4) 0.078 (4) −0.024 (3) 0.000 (3) −0.032 (3)
C8 0.071 (3) 0.088 (4) 0.042 (3) −0.018 (3) −0.014 (2) −0.016 (3)
C9 0.081 (4) 0.100 (4) 0.061 (3) −0.013 (3) −0.001 (3) −0.035 (3)
C10 0.154 (7) 0.104 (5) 0.136 (7) −0.036 (5) 0.023 (6) −0.061 (5)
C11 0.187 (8) 0.088 (5) 0.109 (6) −0.044 (5) 0.038 (5) −0.036 (4)
C12 0.093 (4) 0.096 (4) 0.050 (3) −0.038 (3) 0.000 (3) −0.021 (3)
N1 0.088 (3) 0.093 (3) 0.054 (3) −0.023 (3) −0.011 (2) −0.022 (2)
N2 0.081 (3) 0.098 (3) 0.041 (2) −0.020 (3) −0.009 (2) −0.017 (2)
N3 0.090 (3) 0.086 (3) 0.055 (3) −0.031 (2) 0.008 (2) −0.023 (2)
N4 0.083 (3) 0.080 (3) 0.045 (2) −0.021 (2) −0.001 (2) −0.023 (2)
S1 0.0962 (12) 0.1408 (15) 0.0594 (9) −0.0374 (10) −0.0056 (8) −0.0447 (9)
S2 0.0935 (12) 0.1108 (13) 0.0601 (9) −0.0357 (9) 0.0018 (8) −0.0135 (8)

Geometric parameters (Å, º)

C1—N1 1.418 (7) C7—H7A 0.9600
C1—H1A 0.9600 C7—H7B 0.9600
C1—H1B 0.9600 C7—H7C 0.9600
C1—H1C 0.9600 C8—N4 1.330 (6)
C2—N2 1.316 (6) C8—N3 1.358 (6)
C2—N1 1.346 (6) C8—S2 1.688 (5)
C2—S1 1.705 (5) C9—N4 1.475 (6)
C3—C4 1.457 (9) C9—C10 1.480 (9)
C3—N2 1.464 (7) C9—H9A 0.9700
C3—H3A 0.9700 C9—H9B 0.9700
C3—H3B 0.9700 C10—C11 1.422 (10)
C4—C5 1.423 (10) C10—H10A 0.9700
C4—H4A 0.9700 C10—H10B 0.9700
C4—H4B 0.9700 C11—C12 1.476 (8)
C5—C6 1.473 (8) C11—H11A 0.9700
C5—H5A 0.9700 C11—H11B 0.9700
C5—H5B 0.9700 C12—N4 1.462 (6)
C6—N2 1.474 (6) C12—H12A 0.9700
C6—H6A 0.9700 C12—H12B 0.9700
C6—H6B 0.9700 N1—H1 0.8600
C7—N3 1.432 (6) N3—H4 0.8600
N1—C1—H1A 109.5 N4—C8—N3 115.8 (5)
N1—C1—H1B 109.5 N4—C8—S2 122.6 (4)
H1A—C1—H1B 109.5 N3—C8—S2 121.6 (4)
N1—C1—H1C 109.5 N4—C9—C10 103.7 (5)
H1A—C1—H1C 109.5 N4—C9—H9A 111.0
H1B—C1—H1C 109.5 C10—C9—H9A 111.0
N2—C2—N1 118.2 (4) N4—C9—H9B 111.0
N2—C2—S1 121.6 (4) C10—C9—H9B 111.0
N1—C2—S1 120.2 (4) H9A—C9—H9B 109.0
C4—C3—N2 104.4 (5) C11—C10—C9 108.4 (6)
C4—C3—H3A 110.9 C11—C10—H10A 110.0
N2—C3—H3A 110.9 C9—C10—H10A 110.0
C4—C3—H3B 110.9 C11—C10—H10B 110.0
N2—C3—H3B 110.9 C9—C10—H10B 110.0
H3A—C3—H3B 108.9 H10A—C10—H10B 108.4
C5—C4—C3 111.2 (6) C10—C11—C12 108.9 (6)
C5—C4—H4A 109.4 C10—C11—H11A 109.9
C3—C4—H4A 109.4 C12—C11—H11A 109.9
C5—C4—H4B 109.4 C10—C11—H11B 109.9
C3—C4—H4B 109.4 C12—C11—H11B 109.9
H4A—C4—H4B 108.0 H11A—C11—H11B 108.3
C4—C5—C6 108.3 (6) N4—C12—C11 103.6 (5)
C4—C5—H5A 110.0 N4—C12—H12A 111.0
C6—C5—H5A 110.0 C11—C12—H12A 111.0
C4—C5—H5B 110.0 N4—C12—H12B 111.0
C6—C5—H5B 110.0 C11—C12—H12B 111.0
H5A—C5—H5B 108.4 H12A—C12—H12B 109.0
C5—C6—N2 104.9 (5) C2—N1—C1 124.6 (5)
C5—C6—H6A 110.8 C2—N1—H1 117.7
N2—C6—H6A 110.8 C1—N1—H1 117.7
C5—C6—H6B 110.8 C2—N2—C3 124.3 (5)
N2—C6—H6B 110.8 C2—N2—C6 125.1 (4)
H6A—C6—H6B 108.8 C3—N2—C6 110.6 (5)
N3—C7—H7A 109.5 C8—N3—C7 123.9 (5)
N3—C7—H7B 109.5 C8—N3—H4 118.0
H7A—C7—H7B 109.5 C7—N3—H4 118.0
N3—C7—H7C 109.5 C8—N4—C12 125.5 (4)
H7A—C7—H7C 109.5 C8—N4—C9 123.2 (4)
H7B—C7—H7C 109.5 C12—N4—C9 111.3 (4)
N2—C3—C4—C5 −1.7 (10) C4—C3—N2—C6 −4.0 (7)
C3—C4—C5—C6 6.6 (11) C5—C6—N2—C2 −170.9 (6)
C4—C5—C6—N2 −8.6 (8) C5—C6—N2—C3 7.8 (6)
N4—C9—C10—C11 −15.4 (8) N4—C8—N3—C7 179.3 (5)
C9—C10—C11—C12 21.4 (10) S2—C8—N3—C7 −1.0 (7)
C10—C11—C12—N4 −17.9 (8) N3—C8—N4—C12 −3.0 (7)
N2—C2—N1—C1 179.6 (5) S2—C8—N4—C12 177.3 (4)
S1—C2—N1—C1 −0.3 (7) N3—C8—N4—C9 178.1 (4)
N1—C2—N2—C3 −179.7 (5) S2—C8—N4—C9 −1.6 (6)
S1—C2—N2—C3 0.3 (7) C11—C12—N4—C8 −170.9 (5)
N1—C2—N2—C6 −1.1 (8) C11—C12—N4—C9 8.1 (6)
S1—C2—N2—C6 178.8 (4) C10—C9—N4—C8 −176.9 (5)
C4—C3—N2—C2 174.7 (6) C10—C9—N4—C12 4.1 (6)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N1—H1···S2i 0.86 2.73 3.472 (5) 145
N3—H4···S1ii 0.86 2.64 3.410 (5) 150
C12—H12B···S1iii 0.97 2.84 3.765 (5) 159

Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x, −y+1, −z+1; (iii) x, y, z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BQ2355).

References

  1. Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555-1573.
  2. Bruker (2005). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  5. Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
  6. Jiang, J.-H. (2009). Acta Cryst. E65, o52. [DOI] [PMC free article] [PubMed]
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  8. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812020971/bq2355sup1.cif

e-68-o1706-sup1.cif (22.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020971/bq2355Isup2.hkl

e-68-o1706-Isup2.hkl (129.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812020971/bq2355Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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