. 2012 Jun 20;7(6):e39304. doi: 10.1371/journal.pone.0039304

Table 1. Samples and sequences used in this study.

Family (subfamily)	Species (subspecies)	Collection code	Specimen code	Collecting site	12S	CYT B	ND2
Erinaceidae	Echinosorex gymnura	–	Echinosorex gymnura 0	–	AF348079 ^*	AF348079 ^*	AF348079 ^*
(Galericinae)	Hylomys parvus	–	Hylomys parvus 0a	Sumatra	–	–	DQ630430 ^*
		–	Hylomys parvus 0b	Sumatra	–	–	DQ630429 ^*
		–	Hylomys parvus 0c	Sumatra	–	DQ630427 ^* ^#	–
		–	Hylomys parvus 0d	Sumatra	–	AH009816 ^* ^#	–
		–	Hylomys parvus 0e	Sumatra	–	AH009817 ^* ^#	–
	Hylomys suillus	KIZ0611076	Hylomys suillus 1	Yunnan, China	HQ857485	HQ857523	HQ857504
		KIZ0611095	Hylomys suillus 2	Yunnan, China	HQ857486	HQ857524	HQ857505
		–	Hylomys suillus 0a	Malaysia	AM905042 ^*	AM905042 ^*	AM905042 ^*
		–	Hylomys suillus 0b	Java	AM905041 ^*	AM905041 ^*	AM905041 ^*
	Hylomys s. dorsalis	–	Hylomys suillus dorsalis	Borneo	–	AH009815 ^* ^#	–
	Hylomys s. maxi	–	Hylomys s. maxi 0a	Malaya	–	AH009809 ^* ^#	–
		–	Hylomys s. maxi 0b	Malaya	–	AH009810 ^* ^#	–
		–	Hylomys s. maxi 0c	Sumatra	–	AH009811 ^* ^#	–
		–	Hylomys s. maxi 0d	Malaya	–	AH009812 ^* ^#	–
	Hylomys s. microtinus	–	Hylomys suillus microtinus	Vietnam	–	AH009808 ^* ^#	–
	Hylomys s. siamensis	–	Hylomys s. siamensis 0a	Thailand	–	AH009805 ^* ^#	–
		–	Hylomys s. siamensis 0b	Thailand	–	AH009806 ^* ^#	–
		–	Hylomys s. siamensis 0c	Thailand	–	AH009807 ^* ^#	–
	Hylomys s. suillus	–	Hylomys s. suillus 0a	Java	–	AH009813 ^* ^#	–
		–	Hylomys s. suillus 0b	Java	–	AH009814 ^* ^#	–
	Neohylomys hainanensis	YP22621	Neohylomys hainanensis 1	Hainan, China	HQ857496	HQ857534	HQ857515
		YP22624	Neohylomys hainanensis 2	Hainan, China	HQ857497	HQ857535	HQ857516
		YP22629	Neohylomys hainanensis 3	Hainan, China	HQ857498	HQ857536	HQ857517
	Neotetracus sinensis	KIZ0806027	Neotetracus sinensis 1	Yunnan, China	HQ857494	HQ857532	HQ857513
		KIZ0503272	Neotetracus sinensis 2	Yunnan, China	HQ857495	HQ857523	HQ857514
	Podogymnura truei	–	Podogymnura truei 0	–	AF434823 ^*	AF434829 ^*	–
Erinaceidae	Atelerix albiventris	–	Atelerix albiventris 0	–	M95109.1 ^*	–	–
(Erinaceinae)	Erinaceus amurensis	KIZ0908002	Erinaceus amurensis 1	Liaoning, China	HQ857482	HQ857520	HQ857501
		KIZ080825	Erinaceus amurensis 2	Hubei, China	HQ857483	HQ857521	HQ857502
	Erinaceus concolor	–	Erinaceus concolor 0	Russia	AY012099.1 ^*	–	AF481516 ^*
	Erinaceus europaeus	–	Erinaceus europaeus 0	Sweden	NC 002080^*	NC 002080^*	NC 002080^*
	Hemiechinus auritus	KCB88023	Hemiechinus auritus 1	–	HQ857484	HQ857522	HQ857503
		–	Hemiechinus auritus 0	–	NC 005033^*	NC 005033^*	NC 005033^*
	Mesechinus dauuricus	KIZ0907004	Mesechinus dauuricus 1	Liaoning, China	HQ857487	HQ857525	HQ857510
		KIZ027004	Mesechinus dauuricus 2	Liaoning, China	HQ857488	HQ857526	HQ857509
		KIZ0910001	Mesechinus dauuricus 3	Ningxia, China	HQ857489	HQ857527	HQ857508
		KIZ027005	Mesechinus dauuricus 4	Ningxia, China	HQ857490	HQ857528	HQ857506
		KIZ027006	Mesechinus dauuricus 5	Ningxia, China	HQ857491	HQ857529	HQ857507
	Mesechinus hughi	KIZ027003	Mesechinus hughi 1	Shanxi, China	HQ857492	HQ857530	HQ857512
		KIZ027007	Mesechinus hughi 2	Shanxi, China	HQ857493	HQ857531	HQ857511
	Paraechinus aethiopicus	Qatar-S3	Paraechinus aethiopicus 3	Qatar	HQ857499	HQ857537	HQ857518
		Qatar-S4	Paraechinus aethiopicus 4	Qatar	HQ857500	HQ857538	HQ857519
Soricidae	Crocidura russula	–	Crocidura russula 0	Swiss	NC 006893^*	NC 006893^*	NC 006893^*
	Episoriculus fumidus	–	Episoriculus fumidus 0	Taiwan, China	NC 003040^*	NC 003040^*	NC 003040^*
	Sorex unguiculatus	–	Sorex unguiculatus 0	–	NC 005435^*	NC 005435^*	NC 005435^*
Talpidae	Talpa europaea	–	Talpa europaea 0	Sweden	NC 002391^*	NC 002391^*	NC 002391^*
Solenodontidae	Solenodon paradoxus	–	Solenodon paradoxus 0	–	AF076646 ^*	AF434830 ^*	–

Sequences downloaded from GenBank.

Only used for additional CYT B analysis of Hylomys.