Skip to main content
. Author manuscript; available in PMC: 2013 May 8.
Published in final edited form as: J Chem Theory Comput. 2012 Mar 15;8(5):1750–1764. doi: 10.1021/ct200680g

Table 2.

Boundaries of the subdomains of NBD and the angles δ and τ describing the rotation of NBD-II with respect to NBD-I for two selected open (2KHO and 3C7N:B) and two closed (1KAX and 3C7N:A) experimental structures

Structure Subdomain boundaries
δ [deg]
τ[deg]
Ia Ib NBD-I (Ia+Ib) IIa IIb (IIa+IIb) NBD-II Cα all atom Cα all atom
2KHO I4–P37 I4–D182 K183-L227
P112–D182 S38–A111 K363–T383 D311–R362 G228–E310 K183–R362 60.7 61.0 49.9 50.0
K363–T383

3C7N:B K3–P39 K3–K188 V189–L228
P116–K188 S40–Y115 K361–K384 A307–L359 G229–N306 A180–N360 67.6 67.1 49.8 48.2
K361–K384

1KAX G4–P39 G4–K188 V189–L228
P116–K188 S40–Y115 K361–S381 A307–L359 G229–N306 A180–N360 60.0 58.0 46.7 45.6
K361–S381

3C7N:A M1–V39 M1–I184 F185–R235
I123–I184 V40–F122 L362–P385 V310–P361 D236–L309 F185–P361 54.6 53.1 36.3 38.3
L362–P385