Table 1.

The number of short polypeptide clusters obtained with various thresholds for HMMsearch, cluster filtering and cluster merge.

Threshold	Merge with at least one overlap			Merge with at least 10% overlap			Merge with at least 20% overlap
	10−10	10−15	10−20	10−10	10−15	10−20	10−10	10−15	10−20
20	4188	5324	5326	4443	5807	5797	4760	6443	6399
50	4188	5330	5332	4471	5839	5822	4793	6475	6427
100	4188	5330	5332	4479	5848	5831	4803	6485	6432
No Filter	4189	5331	5333	4486	5856	5840	4812	6494	6440