Table 2.

The number of proteins covered with various thresholds for HMMsearch, cluster filtering, and cluster merge.

Threshold	Merge with at least one overlap			Merge with at least 10% overlap			Merge with at least 20% overlap
	10−10	10−15	10−20	10−10	10−15	10−20	10−10	10−15	10−20
20	4262	4556	4561	4661	4911	4907	4840	5063	5061
50	4262	4585	4590	4858	5073	5058	5050	5201	5216
100	4262	4585	4590	4947	5176	5135	5150	5303	5253
No Filter	5693	5630	5630	5693	5630	5630	5693	5630	5630