Table 3.

The number of SLGIs retained with various thresholds for HMMsearch, cluster filtering, and cluster merge.

Threshold	Merge with at least one overlap			Merge with at least 10% overlap			Merge with at least 20% overlap
	10−10	10−15	10−20	10−10	10−15	10−20	10−10	10−15	10−20
20	6143	6648	6650	7110	7386	7408	7289	7820	7873
50	6143	6800	6802	7604	7681	7757	7770	8109	8370
100	6143	6800	6802	7710	7923	7951	8064	8376	8522
No Filter	9592	9427	9427	9592	9427	9427	9592	9427	9427