Table 2. Melting temperatures (T m)a of Hum24 and Hum48 G4DNA, ligand bound to pre-formed G4DNA and complexes produced when G4DNA was formed in presence of the indicated ligand at [ligand]:[DNA] ratio ‘r’ = 20 for the monomeric and ‘r’ = 10 for the gemini ligands in 100 mM KCl solution.
Entry | ODN/ODN-ligand | Pre-formed G4DNA | G4DNA formed in presence of the ligand | ||
T m °C | ΔT m °Cb | T m °C | ΔT m °Cb | ||
1. | Hum24 | 46 | 0 | 46 | – |
2. | Hum24 + M | 52 | 5 | 55 | 9 |
3. | Hum24 + D1 | 62 | 16 | 70 | 24 |
4. | Hum24 + D2 | 58 | 12 | 79 | 33 |
5. | Hum24 + D3 | 68 | 22 | 84 | 38 |
6. | Hum48 | 51 | 0 | 51 | – |
7. | Hum48 + M | 60 | 9 | 65 | 14 |
8. | Hum48 + D1 | 67 | 16 | 79 | 28 |
9. | Hum48 + D2 | 69 | 18 | 87 | 34 |
10. | Hum48+ D3 | 72 | 21 | 89 | 38 |
Changes in the circular dichroism spectral peak (at 295 nm for the G4DNA and the pre-formed G4DNA-ligand complex; at 266 nm for the G4DNA-ligand complex formed in presence of ligand) monitored as a function of temperature using 2 µM strand ODN concentration. bΔT m values were obtained from the difference in the melting temperatures of the ligand bound and uncomplexed G4DNA. For the G4DNA-ligand complexes when G4DNA was formed in presence of the ligand, the solution was first heated to 95°C for 5 min and then cooled slowly. The results are average of two experiments and are within ±0.5°C of each other.