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. Author manuscript; available in PMC: 2013 Jun 21.
Published in final edited form as: J Phys Chem B. 2012 May 4;116(24):7269–7280. doi: 10.1021/jp301925k

Figure 3.

Figure 3

The simulation box used in equilibrium MD simulations consists of three regions: (i) the inner most region includes phenolate/phenol and explicit water molecules in a 35 Å sphere and defined by the Enzymix parameters; (ii) the next region consists of a 3 Å ring of the Langevin dipoles; and (iii) the outermost region is a dielectric continuum.