Table 4. PPRV sequences analyzed from tissue samples of sheep, goats, and camels in Sudan and from sheep in Morocco, with lineage classifications, 1971 and 2000–2009*.
| Sample no. |
Sequence available |
Coordinates |
Lineage classification |
GenBank accession nos. |
Source |
Year |
||
| X |
Y |
N gene |
F gene |
|||||
| Ov_39300 | PPRV/Kuku/Khartoum/ KHSUD00-1 | 15.617 | 32.6 | IV-SA | HQ131933 | – | Lung | 2000 |
| Cam_1 | PPRV/Kassala/KSUD04-1 | 15.45 | 36.4 | IV-SA | HQ131935 | – | Lung | 2004 |
| Cam_3 | PPRV/Kassala/KSUD04-2 | 15.45 | 36.4 | IV-SA | HQ131947 | – | Lung | 2004 |
| Cam_223 | PPRV/Atbara/NSUD05-1 | 17.701 | 33.99 | IV-SA | HQ131934 | HQ131949 | Lung | 2005 |
| Cam_268 | PPRV/Atbara/NSUD05-2 | 17.701 | 33.99 | IV-SA | HQ131936 | HQ131951 | Lung | 2005 |
| Cam_264 | PPRV/Atbara/NSUD05-3 | 17.701 | 33.99 | IV-SA | HQ131948 | HQ131950 | Lung | 2005 |
| Cam_304 | PPRV/Tambool/BNSUD06-1 | 14.933 | 33.4 | IV-SA | HQ131937 | – | Lung | 2006 |
| Cam_330 | PPRV/Tambool/BNUD06-2 | 14.933 | 33.4 | IV-SA | HQ131938 | – | Lung | 2006 |
| Cam_8 | PPRV/Kassala/KSUD07 | 15.45 | 36.4 | IV-SA | HQ131939 | – | Isolate | 2007 |
| Cam_169 | PPRV/Tambool/BNSUD07-1 | 14.933 | 33.4 | IV-SA | HQ131940 | – | Isolate | 2007 |
| Cam_318 | PPRV/Tambool/BNSUD0-2 | 14.933 | 33.4 | IV-SA | HQ131941 | – | Isolate | 2007 |
| Cam_352 | PPRV/Atbara/NSUD08 | 17.701 | 33.99 | IV-SA | HQ131942 | – | Lung | 2008 |
| Ov_1 | PPRV/Abudelaiq/KSUD08 | 14.967 | 35.92 | IV-SA | HQ131922 | – | Lung | 2008 |
| Ov_25 | PPRV/Bashagra/Gezira/ BNSUD08 | 14.912 | 33.24 | IV-SA | HQ131943 | HQ131955 | Lung | 2008 |
| Ov_140 | PPRV/Gedarif/KSUD08 | 14.033 | 35.38 | IV-SA | HQ131944 | HQ131953 | Lung | 2008 |
| Cap_1 | PPRV/Rabak/BNSUD09 | 13.18 | 32.74 | IV-SA | HQ131945 | HQ131954 | Lung/liver | 2009 |
| Cap_9 | PPRV/Dongola/NSUD09 | 19.169 | 30.47 | IV-SA | HQ131932 | NS | Lung | 2009 |
| Ov_41 | PPRV/Ed Damar/NSUD08 | 17.593 | 33.96 | IV-SA + 2 mut | HQ131931 | HQ131959 | Lung | 2008 |
| Ov_10033 | PPRV/Ed Damar/NSUD00-1 | 17.593 | 33.96 | IV-SA | HQ131929 | NS | Lung | 2000 |
| Ov_10034 | PPRV/Ed Damar/NSUD00-2 | 17.593 | 33.96 | IV-SA | HQ131930 | NS | Lung | 2000 |
| Ov_Soba | PPRV/Soba/Khartoum/ KHSUD00-2 | 15.51 | 32.63 | IV-SA | HQ131920 | NS | Isolate | 2000 |
| Ov_ Al Azaza | PPRV/Al Azaza/BNSUD00 | 14.204 | 35.54 | IV-SA | HQ131917 | NS | Isolate | 2000 |
| Ov_23 | PPRV/Soba/Khartoum/ KHSUD08 | 15.51 | 32.63 | IV-SA | HQ131921 | HQ131952 | Spleen | 2008 |
| Ov_Gedarif | PPRV/Gedarif/KSUD71 | 14.033 | 35.38 | III | HQ131918 | HQ131956 | Isolate | 1971 |
| Ov_Al Hilalia | PPRV/Al Hilalia/BNSUD00 | 14.921 | 33.23 | III | HQ131919 | NS | Isolate | 2000 |
| Ov_67496 | PPRV/Abudelaiq/KSUD00 | 14.967 | 35.92 | III | HQ131946 | NS | Isolate | 2000 |
| Morocco_2008_1 | PPRV/Morocco08-01 | 33.56 | –6.89 | IV | HQ131923 | NS | Lymph | 2008 |
| Morocco_2008_2 | PPRV/Morocco08-02 | 33.56 | –6.89 | IV | HQ131924 | HQ131957 | Lung | 2008 |
| Morocco_2008_3 | PPRV/Morocco08-03 | 33.56 | –6.89 | IV | HQ131925 | NS | Lymph | 2008 |
| Morocco_2008_4 | PPRV/Morocco08-04 | 33.56 | –6.89 | IV | HQ131926 | NS | Lymph | 2008 |
| Morocco_2008_9 | PPRV/Morocco08-09 | 34.03 | –6.8 | IV | HQ131927 | HQ131958 | Lung | 2008 |
| Morocco_2008_11 | PPRV/Morocco08-11 | 30.4 | –9.6 | IV | HQ131928 | NS | Lung | 2008 |
*PPRV, peste des petits ruminants virus; ov, ovine; IV-SA, lineage IV Saudi Arabia cluster; lung, lung tissue sample; KHSUD, Khartoum Region Sudan; cam, camel; KSUD, Kassala Sudan; NSUD, Northern Sudan; BNSUD, Blue Nile Sudan; isolate, virus isolate; cap, caprine; liver, liver tissue sample; NS, not sequenced; IV-SA + 2 mut, lineage IV, differing from Saudi Arabia cluster by 2 mutations; IV-SA, lineage IV Central Africa cluster; spleen, spleen tissue sample; lymph, lymph node sample.