Table 1.
Copy Number and Divergence of Stickleback nLTR-RT
| Clade | Family | Copy Number (>100 bp) | Copy Number (>300 bp) | Full-Length Copy Number | Average Pairwise Divergence (±Standard Deviation) |
| L2 | Maui | 2,396 | 1,691 | 12 | 2.2 ± 0.4 |
| RTE | Total | 2,253 | 1,070 | ||
| Expander “recent” | — | 930 | 28 | 4.7 ± 0.5 | |
| Expander “old” | — | 140 | 0 | 35.6 ± 2.3 | |
| Rex1 | Total | 1,266 | 740 | ||
| Rex1-A | — | 570 | 4 | 3.5 ± 0.4 | |
| Rex1-B | — | 40 | 0 | 19.6 ± 1.8 | |
| Rex1-C | — | 130 | 0 | 18.5 ± 1.6 | |
| L1/Tx1 | Total | 406 | 268 | ||
| A | — | — | 5 | 1.0 ± 0.2 | |
| B | — | — | 4 | 3.0 ± 0.4 | |
| C | — | — | 0 | 4.0 ± 0.5 | |
| D | — | — | 0 | 20.0 ± 2.0 | |
| E | — | — | 0 | 12.2 ± 1.5 | |
| F | — | — | 0 | 27.4 ± 2.4 |