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. Author manuscript; available in PMC: 2012 Jun 25.
Published in final edited form as: Nat Protoc. 2010 Dec 9;6(1):1–14. doi: 10.1038/nprot.2010.168

Table 3.

An example series of compensation controls.

Cells and amount Amount of harvest medium Antibody
Bone marrow cells from Step 4, 10 µl 190 µl None, unstained control
Bone marrow cells from Step 4, 10 µl 190 µl c-Kit, APC (2 µl)
Bone marrow cells from Step 4, 10 µl 190 µl Sca-1, PB (2 µl)
Bone marrow cells from Step 4, 10 µl 190 µl CD34, FITC (2 µl)
Bone marrow cells from Step 4, 10 µl 190 µl Flk2, PE (2 µl)
Lineage-depleted cells from Step 14, 5 µl 245 µl Streptavidin, PO (0.5 µl)

Unstained and single-color controls are necessary in order to set up appropriate voltage and compensation settings for cell sorting. The same antibodies used for the cell mixture sorting are used, at the same dilutions. Lineage-depleted cells are already labeled by the Lineage cocktail and therefore only require streptavidin staining.