Table 2. Assignment of reads from samples T142 and T149 to individual chromosomes of B. prasinos RCC1105 using Geneious Assembler (see Materials and Methods for details).
| T142 | T149 | ||||||||||||
| Chromosome final | Chromosome draft | Length | GC% | Reads | Coverage | Coverage | Coverage Depth | Identical sites | Reads | Coverage | Coverage | Coverage Depth | Identical sites |
| bp | % | # | bp | % | x | % | # | bp | % | x | % | ||
| chromosome_1 | Bathy_chrom000 | 1 352 574 | 48.87% | 17 507 | 887 310 | 64.40% | 4.61 | 95.50% | 44 115 | 1 260 242 | 90.60% | 11.26 | 90.50% |
| chromosome_2 | Bathy_chrom001 | 1 122 692 | 48.55% | 76 131 | 763 755 | 65.50% | 23.96 | 91.70% | 45 448 | 1 045 505 | 89.90% | 13.84 | 88.90% |
| chromosome_3 | Bathy_chrom002 | 1 089 374 | 48.62% | 23 634 | 747 266 | 67.00% | 7.68 | 94.50% | 36 961 | 1 032 050 | 91.80% | 11.66 | 90.00% |
| chromosome_4 | Bathy_chrom003 | 1 037 991 | 48.29% | 14 217 | 613 146 | 58.00% | 4.76 | 95.70% | 19 099 | 914 632 | 86.10% | 6.22 | 91.90% |
| chromosome_5a | Bathy_chrom012 | 550 167 | 48.34% | 4 559 | 299 250 | 53.40% | 2.95 | 96.50% | 13 535 | 504 509 | 89.20% | 8.44 | 90.90% |
| chromosome_5b | Bathy_chrom016 | 467 783 | 48.58% | 2 152 | 222 904 | 47.00% | 1.58 | 97.20% | 13 712 | 437 480 | 90.60% | 10.02 | 90.00% |
| chromosome_6 | Bathy_chrom004 | 989 707 | 48.30% | 17 733 | 677 434 | 66.90% | 6.25 | 94.30% | 29 292 | 915 584 | 90.10% | 10.06 | 90.60% |
| chromosome_7 | Bathy_chrom005 | 955 054 | 48.42% | 49 892 | 608 532 | 61.60% | 17.54 | 93.30% | 30 116 | 845 293 | 85.80% | 10.63 | 90.30% |
| chromosome_8 | Bathy_chrom006 | 937 610 | 48.54% | 10 892 | 545 919 | 57.00% | 4.09 | 95.70% | 29 489 | 841 544 | 86.80% | 10.70 | 89.90% |
| chromosome_9 | Bathy_chrom007 | 895 347 | 48.51% | 17 995 | 636 008 | 69.30% | 7.07 | 93.80% | 23 672 | 806 272 | 87.50% | 9.05 | 90.70% |
| chromosome_10 | Bathy_chrom008 | 794 148 | 48.38% | 20 350 | 533 074 | 65.30% | 9.03 | 93.70% | 19 996 | 743 420 | 90.90% | 8.66 | 90.20% |
| chromosome_11 | Bathy_chrom009 | 741 502 | 48.62% | 26 119 | 516 527 | 67.50% | 12.50 | 92.40% | 12 368 | 634 120 | 83.70% | 5.70 | 92.50% |
| chromosome_12a | Bathy_chrom019 | 201 229 | 47.52% | 2 066 | 106 614 | 52.00% | 3.66 | 96.30% | 3 707 | 180 588 | 87.40% | 6.31 | 91.40% |
| chromosome_12b | Bathy_chrom014 | 511 334 | 48.55% | 19 985 | 391 273 | 74.20% | 13.84 | 92.10% | 15 530 | 483 876 | 91.70% | 10.45 | 89.30% |
| chromosome_13 | Bathy_chrom010 | 706 576 | 48.54% | 90 889 | 363 302 | 48.00% | 45.29 | 91.30% | 17 849 | 584 838 | 80.20% | 8.54 | 91.00% |
| chromosome_14 | Bathy_chrom011-50 | 662 304 | 42.24% | 1 873 | 264 505 | 39.30% | 0.93 | 97.70% | 12 822 | 433 085 | 63.70% | 6.41 | 93.90% |
| chromosome_15 | Bathy_chrom013 | 519 535 | 48.13% | 6 320 | 324 598 | 61.10% | 4.30 | 94.80% | 10 865 | 473 213 | 88.80% | 7.14 | 91.60% |
| chromosome_16 | Bathy_chrom015 | 481 036 | 48.08% | 14 765 | 268 376 | 52.30% | 10.67 | 94.00% | 14 526 | 445 984 | 87.50% | 10.16 | 89.90% |
| chromosome_17 | Bathy_chrom017-28 | 465 570 | 47.66% | 18 609 | 283 891 | 58.50% | 14.21 | 91.80% | 10 433 | 390 682 | 81.30% | 7.63 | 90.60% |
| chromosome_18 | Bathy_chrom018 | 310 170 | 46.97% | 9 003 | 226 193 | 70.50% | 10.30 | 91.20% | 5 203 | 269 409 | 84.60% | 5.67 | 91.00% |
| chromosome_19 | Bathy_chrom020 | 146 238 | 41.65% | 73 | 10 779 | 7.20% | 0.13 | 99.30% | 129 | 11 504 | 7.70% | 0.21 | 99.10% |
| Chloroplast | Bathy_chrom021 | 54 761 | 41.12% | 21 | 5 029 | 6.90% | 0.09 | 99.70% | 46 | 12 675 | 17.30% | 0.20 | 99.40% |
| Mitochondrion | Bathy_chrom024 | 42 168 | 39.97% | 261 | 30 825 | 72.20% | 1.74 | 97.00% | 3 470 | 43 650 | 99.90% | 21.90 | 91.70% |
| Total or mean | 15 034 870 | 445 046 | 9 326 510 | 62.03% | 10.38 | 412 383 | 13 310 155 | 88.53% | 9.34 | ||||
| % of reads | 66.3% | 61.4% | |||||||||||
The numeration of chromosomes is provided both for the draft version of the genome (used in this work) and for the final version of the genome [37].