Table 3. Similarity between B. prasinos RCC1105 genome and T142 and T149 assemblies for the three larger chromosomes.

	Length alignment (bp)			% Identical sites			% Identical sites (CDS + non CDS)
	CDS + non CDS	CDS	non CDS	CDS + non CDS	CDS	non CDS	Bathy vs T142	Bathy vs T149	T142 vs T149
chromosome_1	78 022	70 644	7 376	96.7%	97.5%	89.5%	97.8%	97.3%	98.3%
chromosome_2	158 544	142 659	19 681	95.8%	97.0%	87.2%	97.0%	96.6%	97.4%
chromosome_3	123 912	115 661	12 823	96.7%	97.4%	89.5%	97.8%	97.4%	97.8%
Total/Average	360 478	329 964	39 880	96.3%	97.2%	88.5%	97.4%	97.0%	97.7%

Only regions with coverage in excess 10× for both samples were considered. Total genome and non-CDS regions were analyzed separately (see Material and Methods for details).