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. 2012 Jun 25;7(6):e38318. doi: 10.1371/journal.pone.0038318

Figure 5. Comparison of the molecular dynamics of the native tetramer and a putative dimeric form of Vv-DHDPS.

Figure 5

Simulations were analyzed by aligning chain A from all frames of the trajectories, and computing the root mean squared fluctuations (RMSF) of chain B, the monomer on the opposite side of the ‘tight-dimer’ interface. Shown are the RMSF values by residue number for the dimer (red) and tetramer (black). The inset shows 75 frames of the aligned dimer at 1 ns intervals.