. 2012 Jun 22;9:33. doi: 10.1186/1742-4690-9-33

Table 1.

Cellular proteins detected exclusively in wild-type Nef immunocomplexes

Accession	Gene	Protein	Description		Unique # peptides
FACS-sorted 5C Nef
Q9NV70	EXOC1	EXOC1	Exocyst complex component 1, isoform 1		3
Q96KP1	EXOC2	EXOC2	Exocyst complex component 2		3
O60645	EXOC3	EXOC3	Exocyst complex component 3, isoform 1		3
Q96A65	EXOC4	EXOC4	Exocyst complex component 4		6
Q8TAG9	EXOC6	EXOC6	Exocyst complex component 6		1
Q9UL85 ^a			Myosin-reactive Igκ chain variable region (fragment)		1
P19838	NFKB1	NFKB1	Nuclear factor NF-κB p105 subunit, isoform 2		1
Unsorted 5C Nef
Q9NV70	EXOC1	EXOC1	Exocyst complex component 1, isoform 1		3
Q96KP1	EXOC2	EXOC2	Exocyst complex component 2		3
O60645	EXOC3	EXOC3	Exocyst complex component 3, isoform 1		2
Q96A65	EXOC4	EXOC4	Exocyst complex component 4		4
Q9NP29 ^a			Microfibrillar protein 2 (fragment)		1
Q13177	PAK2	Pak2	PAK2 Serine/threonine-protein kinase		3
P60866	RPS20	RS20	40S ribosomal protein S20		1
*Gene or Accession*	D^N-score^b	Z-score^b	Description	Total #peptides	Unique # peptides
FACS-sorted and unsorted 5C Nef combined
EXOC1	7.14	10.09	Exocyst complex component 1, isoform 1	6	5
EXOC2	7.14	10.09	Exocyst complex component 2	6	5
EXOC3	5.83	10.09	Exocyst complex component 3, isoform 1	4	4
EXOC4	9.21	10.10	Exocyst complex component 4	10	6
EXOC6	0.41	10.05	Exocyst complex component 6	1	1
NFKB1	0.05	−0.59	Nuclear factor NF-κB p105 subunit, isoform 2	1	1
PAK2	0.70	10.09	PAK2 Serine/threonine-protein kinase	3	3
Q9NP29 ^a	0.41	10.05	Microfibrillar protein 2 (fragment)	1	1
Q9UL85 ^a	0.41	10.05	Myosin-reactive Igκ chain variable region (fragment)	1	1
RPS20	0.04	−1.51	40S ribosomal protein S20	1	1

a) Unreviewed entries from UniProtKB/TrEMBL; all other accessions from Swiss-Prot/UniProtKB [57]. b) Statistical scores obtained via CompPASS analysis.