Table 2.
List of differentially regulated proteins within the Equisetum hyemale rhizomes.
| Database entrya | Descriptionb | Speciesc | ACC.d | E-valuee | Peptidesf |
|---|---|---|---|---|---|
| APICAL TIP | |||||
| EhRi_031612 | Uncharacterized protein | A. thaliana | Q9LV66 | 1.21e−10 | AEQDVAGGILYAR-AFGAQEVGK-AVPSFGALKPHLIFK-KAEQDVAGGILYAR-RAFGAQEVGK-RKAEQDVAGGILYAR-SAIASDALLFYK-SAIASDALLFYKR-KAEQDVAGGILYAR-RKAEQDVAGGILYAR-SAIASDALLFYK |
| EhRi_058577 | T-complex protein 1 subunit gamma | H. sapiens | P49368 | 0 | ACTVLLRGPSK-ALEDAIAALDK-AYHPTVICR-DIGVFDAYNVK-DLLNEVER-ELDLTHPAAR-IAVPIDIDDRK-IDDIVSGIR-IILLDCPLEYK-NLQDAM*GVAR-TAIEAACMLLR-TLAQNCGVNVIR-VEKVPGGTLEDSK-ALEDAIAALDK-DIGVFDAYNVK-IDDIVSGIR-TLAQNCGVNVIR-VEKVPGGTLEDSK-VPGGTLEDSK |
| EhRi_053876 | Acyl carrier protein1 | C. glauca | P93092 | 4.18e−28 | RVVEIVTK-SSRSLKVLCAASPETAK-VVEIVTK-TVQDAADLIER |
| EhRi_031943 | – | – | AEIDSLRQEVTR-AVEPLKAELHR-LAATHVGLR-LRM*DLVNFEK-LVTQHGEIQR-MDLVNFEK-NLHIM*SREIEKLR-SDIHQLPAM*K-LAATHVGLR-LVTQHGEIQR-MDLVNFEK | ||
| EhRi_053749 | KH domain-containing protein | A. thaliana | P58223 | 1.47e−17 | GREEESGGGGGEEGKR-RTSGATITIQETR-SIQDTSGATVR-TSGATITIQETR-VFSALELVTSHLR-WPGWPGETVFR-LLVAGTQAGSLIGK-SIQDTSGATVR-VFSALELVTSHLR |
| EhRi_049681 | RNA-binding protein Nova-1 | R. norvegicus | Q80WA4 | 9.50e−19 | EAIEEADAGGSGAVPSR-HVELM*GTTEQINR-KFDGGYGGGGGGGESER-KFDGGYGGGGGGGESERR-RVSGFSSNPGGGGSSDTER-RVSGFSSNPSGGDTER-RVSGFSSNPSGGDTERR-RVTGFSSHPGSDTER-TQM*PGGVSQQQQAGYR-VGLIIGK-VSGFSSNPGGGGSSDTER-VSGFSSNPSGGDSER-VSGFSSNPSGGDSERR-VSGFSSNPSGGDTER-VSGFSSTPNPSGGEPER-VSNQAEEQVQM*R-EAIEEADAGGSGAVPSR-HVELM*GTTEQINR-KFDGGYGGGGGGGESER-TQM*PGGVSQQQQAGYR-VSGFSSNPGGGGSSDTER |
| EhRi_043409 | Uncharacterized RNA-binding protein | S. pombe | O94432 | 2.02e−33 | DSGSSYYGNNYR-GFGYVTFSSLESAEK-GFSFVTFADEATADR-GIGFVTYENPDSVEK-HYFSNFGR-ILDIYLPK-IPSEATTSELR-LVVLGLPWDIDTEGLKK-SHELFGQPIVVER-YFEQFGTVTDLYM*PK-FGAIDDIIVM*K-GFGYVTFSSLESAEK-GFSFVTFADEATADR-GIGFVTYENPDSVEK-ILDIYLPK-IPSEATTSELR-SHELFGQPIVVER |
| EhRi_046763 | Uncharacterized RNA-binding protein | S. pombe | O94432 | 7.73e−48 | GFGFVTYSNPSVVDK-IFIGGLSWETTTEK-KGTEDFAPASHGPPPIGR-KLFVGGLPLTLK-KYGEIVDSVVM*K-LFVGGLPLTLK-VGGGFGDASR-VGGGGGGGGGGYGDPSR-VGGGGYGDVGR-VGGGYGDVSR-VGVGGGYGDASR-VMLDQHILDGR-YGEIVDSVVM*K-IFIGGLSWETTTEK-KGTEDFAPASHGPPPIGR-KYGEIVDSVVM*K-VGGGGYGDVGR-VGVGGGYGDASR |
| ELONGATION ZONE | |||||
| EhRi_040863 | Galactomannan galactosyltransferase | C. tetragonoloba | Q564G7 | 2.00e−116 | ALNYADNQVLR-EQPDLSSKEEYHNYEK-LM*VEFGK-M*YVVTGTQPTPCK-NCQWSFDFM*ER-SPGGDHLLLR-SWVGLNAGSFLIR-ALNYADNQVLR-SPGGDHLLLR-SWVGLNAGSFLIR |
| EhRi_053607 | 22.7 kDa class IV heat shock protein | P. sativum | P19244 | 2.55e−16 | AYDEDGILTIIIPK-KIDIEIELVNGTLR-LPPPSDNIDSK-LPPPSDNIDSKEIR-VDWVETPSQHVFK-AYDEDGILTIIIPK-NLLSEFQVSSGTTCR |
| EhRi_031342 | Phosphomannomutase | O. sativa | Q7XPW5 | 2.40e−129 | AATLEM*LQFLQELR-DAFEQYDK-DFLGEENLK-GTFIEFR-KAATLEM*LQFLQELR-KAATLEMLQFLQELR-KAATLEMLQFLQELRK-KVVAVGVVGGSDLIK-M*GM*LNVSPIGR-MGMLNVSPIGR-RPGVIALFDVDGTLTHPR-SGQLIGNQSVK-TLGHTVSSPDDTK-TLGHTVSSPDDTKEQCK-TYEGGNDFEIFSSSK-VVAVGVVGGSDLIK-RPGVIALFDVDGTLTHPR-TYEGGNDFEIFSSSK-VVAVGVVGGSDLIK |
| EhRi_063086 | Endoglucanase 25 | A. thaliana | Q38890 | 0 | EETQQSWLLGSGK-LLLNPGYPYEDLLK-LTGAQVILSR-LVNGAGVLYDLAR-VLLFFNAQK-YEAVGELEHIK-LLLNPGYPYEDLLK-LVNGAGVLYDLAR-SQIDYIMGDNPNK |
| EhRi_043500 | Mannose-1-phosphate guanyltransferase beta | A. thaliana | O22287 | 2.83e−170 | ALILVGGFGTR-DFETSLDVK-DYITGLR HGGEATIM*VTK-HGGEATIM*VTKVDEPSK-HGGEATIMVTK-IELRPTSIEK-IGDGCLIGPDVSIGK-INAGIYLLNPDVM*NK-INAGIYLLNPDVMNK-KLASGLHVIGNVLVDETAR-LASGLHVIGNVLVDETAR-LFAMVLPGFWM*DIGQPR-NCVIEPGVR-RHGGEATIMVTK-SSILKPEIVM*-YGVVVM*DEK-ALILVGGFGTR-INAGIYLLNPDVM*NK-KLASGLHVIGNVLVDETAR-SSILKPEIVM* |
| EhRi_039670 | Endoglucanase 10 | A. thaliana | Q8LCP6 | 4.07e−179 | AKDLFAFADKYR-ASYSVTYPEEQK-DDPTYSAELLAK-DLFAFADKYR-IPGVQVLLAR-KDDPTYSAELLAK-LNCAGATYTSK-LPSDNPISWR-SGKLPSDNPISWR-YDLLNPSTAGLQNYK-AKDLFAFADKYR-ASYSVTYPEEQK-KDDPTYSAELLAK-LNCAGATYTSK-LPSDNPISWR-SGKLPSDNPISWR-YDLLNPSTAGLQNYK |
| EhRi_050115 | Mannose-1-phosphate guanyltransferase alpha | D. disoideum | Q86HG0 | 4.00e−125 | CSSLYLAQYR-IGPNVSISANAR-LDQDILTPLAGK-LDQDILTPLAGKK-STSPDLLASGDGIR-STSPDLLASGDGIRK-VSSFEALQSATK-YGGLGTLLVK-FRPLSLNIAK-IGPNVSISANAR |
aDatabase accession numbers of the apical tip up-regulated proteins in relation to the elongation zone and vice-versa. Reported proteins are those inferred by the largest number of peptide sequences within a group of proteins sharing the same pool of peptides.
bProtein description retrieved by BLASTP searches against the UNIPROTKB\SwissProt database.
cAccession number retrieved by BLASTP searches against the UNIPROTKB\SwissProt database.
dSource organism from which the BLASTP retrieved accession number was obtained.
eBLAST expected value observed for the retrieved description.
fPeptide sequences.