Table 13.

ID task primary evaluation results: F-scores by event type

	FAUST	UMass	Stanford	ConcordU	UTurku	PNNL	PredX	Size
GENE EXPRESSION	70.68	66.43	54.00	56.57	64.88	53.33	0.00	512
TRANSCRIPTION	69.66	68.24	60.00	70.89	57.14	0.00	53.85	77
PROTEIN CATABOLISM	75.00	72.73	20.00	66.67	33.33	11.76	0.00	33
PHOSPHORYLATION	64.00	66.67	40.00	54.55	60.61	64.29	40.00	69
LOCALIZATION	33.33	14.29	31.58	20.00	66.67	20.69	0.00	49
Simple event total	68.47	63.55	52.72	56.78	62.67	43.87	18.18	740
BINDING	31.30	34.62	23.44	40.00	22.22	20.00	28.28	156
PROCESS	65.69	62.26	73.57	67.17	41.57	51.04	53.27	901
Non-regulation total	63.78	60.68	63.59	62.43	46.39	47.34	43.65	1797
REGULATION	35.44	30.49	17.67	19.43	22.96	0.00	2.16	267
POSITIVE REGULATION	47.50	49.49	34.78	23.41	41.28	24.60	21.02	455
NEGATIVE REGULATION	58.86	60.45	44.44	47.96	52.11	25.70	9.49	260
Regulation total	47.07	46.65	33.02	28.87	39.49	18.45	9.71	982
Subtotal	57.28	55.03	52.09	46.60	43.33	37.53	28.38	2779
NEGATION	0.00	0.00	0.00	22.92	32.91	0.00	0.00	96
SPECULATION	0.00	0.00	0.00	3.23	15.00	0.00	0.00	44
Modification total	0.00	0.00	0.00	11.82	26.89	0.00	0.00	140
Total	55.59	53.42	50.63	44.21	42.57	36.27	27.49	2919

The Size column gives the number of annotations of each type in the given data (training+development). Best result for each type shown in bold.