Skip to main content
. 2012 Mar 14;40(12):e88. doi: 10.1093/nar/gks232

Table 2.

Phe-tRNAPhe variant parametersa

E. coli E. coli Cy3 E. coli Cy5 E. coli Cy5.5 Yeast Yeast Cy3 Yeast Cy5
Phe-tRNAPhe preparation (%)
Labeling 80 90 79 92 93
Charging 28 25 15 26 44 37 30
Empirical parameters
tLb (2 µM) 1.00 ± 0.05 1.47 ± 0.11 1.13 ± 0.22 1.13 ± 0.08 1.20 ± 0.11 1.27 ± 0.11 2.33 ± 0.15
tLb (4 µM) 1.27 ± 0.11 1.67 ± 0.04 1.07 ± 0.08 NA 1.07 ± 0.07 1.18 ± 0.11 2.27 ± 0.25
S1c (2 µM) 1.00 ± 0.22 0.48 ± 0.17 0.42 ± 0.04 0.71 ± 0.19 0.79 ± 0.04 0.42 ± 0.02 0.21 ± 0.02
S1c (4 µM) 2.34 ± 0.06 0.60 ± 0.07 0.43 ± 0.04 NA 1.43 ± 0.05 0.50 ± 0.03 0.09 ± 0.01
A1d (2 µM) 1.00 ± 0.09 0.87 ± 0.10 0.35 ± 0.05 0.55 ± 0.17 1.02 ± 0.04 0.68 ± 0.01 0.38 ± 0.02
A1d (4 µM) 2.89 ± 0.06 1.52 ± 0.09 0.81 ± 0.03 NA 2.41 ± 0.01 1.24 ± 0.06 0.50 ± 0.02
S2e (2 µM) 1.00 ± 0.14 1.17 ± 0.15 0.63 ± 0.07 0.37 ± 0.18 1.14 ± 0.08 0.71 ± 0.09 0.68 ± 0.04
S2e (4 µM) 2.61 ± 0.12 1.54 ± 0.12 0.78 ± 0.11 NA ±  1.74 ± 0.03 1.03 ± 0.05 0.73 ± 0.09
Relative 14C-Phe incorporationf
1.00 ± 0.02 0.98 ± 0.02 0.13 ± 0.01 NA 0.66 ± 0.01 0.43 ± 0.02 0.12 ± 0.01
Simulation
Relative Inline graphic 1g 0.1 0.025 0.2 1g 0.05 0.025
Phase 2 steady-state Phe-tRNAPhe concentration (µM) 0.1 0.1 0.01 0.01 0.15 0.025 0

aData at 2 µM added Phe-tRNAPhe are presented in Figure 4B and C. Parallel results obtained at 4 µM Phe-tRNAPhe are summarized in the table. Experiments were performed using 2–5 repeats. Data obtained with 2 µM E. coli tRNA variants was repeated with two different CFPS batches. All values were normalized to 2 µM E. coli Phe-tRNAPhe.

bLag time.

cPhase-1-slope.

dPhase-1-amplitude.

ePhase-2-slope.

fAfter 30-min incubation.

gEqual to k2.