Table 2.
Relative occurrence of C. metallidurans CH34 genomic islands and plasmids in C. metallidurans strains as indicated by CGH*
| CMGI | AS39 | AS167 | AS168 | KT01 | KT02 | KT21 | SV661 | CH42 | CH79 | 31A | NE12 | NA1 | NA2 | NA4 | 43015 | 45957 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CMGI-1 | 90.8 | 87.5 | 81.7 | 81.7 | 90.8 | 91.7 | 86.7 | 29.2 | 62.5 | 23.3 | 92.5 | 63.3 | 65.8 | 37.5 | 50.0 | 41.7 |
| CMGI-2 | 86.6 | 86.6 | 78.6 | 83.0 | 86.6 | 89.3 | 83.0 | 27.7 | 22.3 | 15.2 | 30.4 | 18.8 | 24.1 | 12.5 | 32.1 | 25.0 |
| CMGI-3 | 89.5 | 77.9 | 47.7 | 84.9 | 91.9 | 87.2 | 51.2 | 26.7 | 22.1 | 20.9 | 30.2 | 26.7 | 29.1 | 20.9 | 30.2 | 24.4 |
| CMGI-4 | 88.7 | 86.8 | 81.1 | 84.9 | 90.6 | 92.5 | 86.8 | 22.6 | 47.2 | 13.2 | 77.4 | 66.0 | 64.2 | 7.5 | 88.7 | 86.8 |
| CMGI-5 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 38.9 | 22.2 | 16.7 | 16.7 | 22.2 | 27.8 | 22.2 | 50.4 | 44.4 |
| CMGI-6 | 46.2 | 46.2 | 46.2 | 38.5 | 46.2 | 84.6 | 46.2 | 23.1 | 30.8 | 15.4 | 7.7 | 0 | 7.7 | 7.7 | 0 | 0 |
| CMGI-7 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 69.2 | 100 | 61.5 | 53.8 | 61.5 | 100 | 69.2 | 53.8 |
| CMGI-8 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 42.9 | 28.6 | 28.6 | 28.6 | 28.6 | 28.6 | 28.6 | 28.6 | 28.6 |
| CMGI-9 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 20.0 | 20.0 | 13.3 | 6.7 | 0 | 13.3 | 0 | 0 | 0 |
| CMGI-10 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 7.1 | 7.1 | 0 | 0 | 0 | 7.1 | 7.1 | 7.1 | 0 |
| CMGI-11 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 14.3 | 57.1 | 100 | 57.1 | 57.1 | 57.1 | 28.6 | 28.6 | 28.6 |
| CMGI-12§ | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 0 | 0 | 0 | 0 | 0 | 11.1 | 0 | 22.2 | 0 |
| CMGI-13§ | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 31.3 | 25.0 | 6.3 | 6.3 | 12.5 | 12.5 | 18.8 | 18.8 |
| CMGI-A§ | 89.0 | 91.8 | 82.2 | 87.7 | 94.5 | 97.3 | 91.8 | 57.5 | 24.7 | 84.9 | 19.2 | 19.2 | 21.9 | 83.6 | 63.0 | 61.6 |
| CMGI-B§ | 100 | 95.2 | 85.7 | 100 | 100 | 100 | 95.2 | 28.6 | 19.0 | 85.7 | 61.9 | 14.3 | 23.8 | 85.7 | 71.4 | 61.9 |
| CMGI-C§ | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 14.3 | 14.3 | 14.3 | 14.3 | 14.3 | 14.3 | 0 | 14.3 | 14.3 |
| CMGI-D§ | 96.2 | 95.2 | 86.5 | 87.5 | 91.3 | 95.2 | 91.3 | 52.9 | 31.7 | 91.3 | 63.5 | 26.9 | 32.7 | 95.2 | 82.7 | 77.9 |
| CMGI-E§ | 99.0 | 98.0 | 98.0 | 96.0 | 99.0 | 97.0 | 99.0 | 25.7 | 17.8 | 9.9 | 17.8 | 10.9 | 20.8 | 10.9 | 10.9 | 8.9 |
| CMGI-28a | 91.1 | 88.9 | 86.7 | 86.7 | 91.1 | 95.6 | 88.9 | 53.3 | 44.4 | 73.3 | 71.1 | 86.7 | 66.7 | 86.7 | 93.3 | 95.6 |
| CMGI-28b | 100 | 100 | 83.3 | 91.7 | 100 | 100 | 91.7 | 33.3 | 100 | 8.3 | 100 | 100 | 91.7 | 8.3 | 25.0 | 16.7 |
| CMGI-28c | 100 | 83.3 | 75.0 | 83.3 | 83.3 | 91.7 | 83.3 | 25.0 | 16.7 | 33.3 | 8.3 | 75.0 | 50.0 | 75.0 | 91.7 | 91.7 |
| pMOL28 | 93.4 | 87.5 | 77.6 | 86.2 | 94.1 | 95.4 | 82.2 | 29.6 | 31.6 | 72.4 | 38.8 | 81.6 | 55.9 | 71.7 | 90.1 | 88.2 |
| CMGI-30a | 98.4 | 96.8 | 91.9 | 88.7 | 98.4 | 98.4 | 93.5 | 93.5 | 83.9 | 83.9 | 88.7 | 85.5 | 85.5 | 87.1 | 77.4 | 72.6 |
| CMGI-30b | 98.8 | 97.6 | 90.4 | 73.5 | 98.8 | 98.8 | 92.8 | 61.4 | 100 | 71.1 | 95.2 | 95.2 | 95.2 | 96.4 | 66.3 | 59.0 |
| pMOL30 | 98.6 | 97.2 | 92.6 | 83.3 | 99.1 | 99.1 | 94.4 | 55.6 | 88.0 | 55.6 | 88.4 | 80.1 | 80.1 | 86.6 | 51.4 | 42.6 |
*Percentage of genes related to a particular genomic island (CMGI) or plasmid (pMOL) displaying a positive hybridization signal by CGH. §Genomic islands identified in this study.