Table 4.
Occurrence of C. metallidurans CH34 metal resistance gene clusters in C. metallidurans strains as indicated by CGHa, b
| Gene cluster in CH34c, d | AS39 | AS167 | AS168 | KT01 | KT02 | KT21 | SV661 | CH42 | CH79 | 31A | NE12 | NA1 | NA2 | NA4 | 43015 | 45957 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| cdfX, pbrR2cadA pbrC2, | XAC2 | XAC2 | XAC2 | XAC2 | XAC2 | XAC2 | XAC2 | XAC2 | ||||||||
| pbrR3 | ||||||||||||||||
| pbrUb|UaTR pbrABCD | R | UbUa | UbRAD | UbRABCD | ||||||||||||
| merRTPA'A″ | R | R | R | R | R | RPA | RPA | R | R | RA | ||||||
| merRTPADE urf-2 | ||||||||||||||||
| merRTPADE urf-2 | ||||||||||||||||
| merRTΔP | RTΔP | RTΔP | RTΔP | RTΔP | RTΔP | RTΔP | RTΔP | RTΔP | RTΔP | |||||||
| ChrBAF | F | F | BF | BF | BF | BF | ||||||||||
| chrIBACEFONPYZ | IBACEOY | IBACEFOY | Z | BO | O | |||||||||||
| cusDCBAF | D | D | D | DB | D | D | D | D | ||||||||
| silDCBA cusΔF | C | F | F | |||||||||||||
| copSRABCD | S | S | SC | SC | C | C | SC | SC | C | SC | C | C | C | SC | C | |
| copV-W(*) | IJF | KCIJFOH | FH | |||||||||||||
| czcLRS ubiG czcBa|BbCI | I | I | I | I | I | |||||||||||
| zntA | ||||||||||||||||
| czcMNICBADRSEJ ompP | B | BS | ompP | S | S ompP | S | ||||||||||
| czcP | ompP | |||||||||||||||
| nimBAa|AbC | C | C | BC | BC | C | C | C | BC | BC | C | C | |||||
| cnrYXHCBAT | HC | HC | YHC | HC | HC | C | HC | YXHCBA | YXHCBAT | C | HC | HC | YXHCA | C | C | |
| nccCB″B'A nreB | CB' | CB | B' | CB"B'A | B" | B" | CB' | CB"B'A | ||||||||
| arsPHC1BC2IRM | ||||||||||||||||
| cupRAC | R | R | ||||||||||||||
| agrCBARS | S | S | B | |||||||||||||
| hmzRS hmzBΔA | RB | RB | RBA | RBA | R | R | B | RSBΔA | RSBΔA | RSBΔA | R | R | B | RSBΔA | R | R |
| hmvCBΔA | CB | C | BA | BA | BA | BA | A | |||||||||
| zniABCSR znePRSCAB(#) | Ci | Ci | Ci | Ci | Ci | Ci | Ci | Ci | Ci | Ci | Ci | CiCe | CiCe | Ci | ||
| hmyCB|hmyA | C | C | A | A |
aOnly genes that did not display positive hybridization signals are shown. bSee ref. [8] for the extensive and descriptive table with metal detoxifications in C. metallidurans CH34. cUnderlined genes are regulators; dInsertion (IS or Tn), frameshift and truncation are indicated by (|), (','') and (Δ), respectively. *Complete cluster is copVTKMNSRABCDIJGFOLQHEW; #zniC (Ci) and zneC (Ce).