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. 2012 Apr 1;9(4):437–445. doi: 10.4161/rna.20480

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Figure 2. Differential expression of S. Typhimurium island-encoded sRNAs during growth under various stress conditions determined by northern blot analysis32 or RT-PCR.57 Expression levels are shown as high, medium, low and no expression.32 Cultures of S. Typhimurium were grown under different conditions (described from left-hand side): Cells grown in LB to an OD600 of 0.3, 1 and 4.5; Oxygen limitation overnight growth without agitation in 50 mL Falcon tubes to an OD600 of 0.9; Osmotic stress—cells grown in LB containing elevated (0.5 M) NaCl levels for 30 min; Oxidative stress using 0.2 mM paraquat (PQ) and 1 mM hydrogen peroxide (H2O2); Iron limiting conditions—addition of 0.2 mM 2,2’ dipyridyl; pH stress – LB at pH 4.9 (adjusted with HCl) and LBK media at pH 8.4; N min low Mg and N min high Mg – N minimal media with 10 µM MgCl2 (low magnesium) and 10 mM MgCl2 (high magnesium); Cold shock at 15°C and heat shock at 42°C; Intra-macrophage 1h and 8h – within activated J774.A1 macrophage cells assayed using gentamycin protection assay;32 In vitro conditions resembling the gastrointestinal tract.57

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