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. 2012 Apr 1;9(4):446–457. doi: 10.4161/rna.17212

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Copyright © 2012 Landes Bioscience

This is an open-access article licensed under a Creative Commons Attribution-NonCommercial 3.0 Unported License. The article may be redistributed, reproduced, and reused for non-commercial purposes, provided the original source is properly cited.

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graphic file with name rna-9-446-g1.jpg — Figure 1.A. tumefaciens TSS revealed by dRNA-seq. (A) and (B) Enrichment of primary 5′ ends by TEX treatment (in –Vir libraries). Screenshots of (A) flaA and (B) ftsH are shown. The distance between the TSS and the AUG start codon is indicated. (C) Histogram representing the 5′UTR length distribution. (D) A. tumefaciens consensus promoter sequence. Sequences 40 nt upstream and 10 nt downstream of all identified TSS were extracted and aligned. Conserved sequences were visualized with the WebLogo 3.0 program. Numbering of bases is given relative to the TSS.