Table 2. Validated sRNAs.

sRNA	Position	Flanking Genes	Antisense Gene	Size dRNA-seq	Size Northern
circular chromosome
C1	109476 – 109593	-	atu0105	117	100, 70
C2	112675 – 112536	atu0109 / atu8081	-	139, 98	140, 95
C3	317175 – 317330	atu0323 / atu0324	-	155	170, 70
C4	998103 – 998034	atu1000 / atu1001	-	69	50
C5	1275442 – 1275296	-	atu1287	146	140
C6	1288585 – 1288698	atu1298 / atu1299	-	113	100
C7	1345809 – 1345652	atu1350 / atu1351	-	157, 103	160, 105
C8	1995974 – 1995854	atu2036 / atu2038	-	120	120
C9	2087200 – 2087380	atu2122 / atu2123	-	180	180
C10	2667194 – 2667282	atu2683 / atu2684	-	88	85

linear chromosome
L1	1179739 – 1179913	-	atu4061	174	170, 130
L2	1563974 – 1564060	atu4421 / atu4422	-	86	85
L3	1758411 – 1758628	-	atu4611	217	140
L4	1830948 – 1831214	-	atu4669	266	270
L5	1831445 – 1831606	atu4670 / atu4671	-	161, 114	160, 115
L6	1966571 – 1966697	atu4791 / atu4792	-	126	130

At-plasmid
At1	55274 – 55161	atu5055 / atu5056	-	113	115
At2	363304 – 363131	-	atu5372	173	170

Ti-plasmid
Ti1	148374 – 148279	-	atu6129	95	110, 75
Ti2	173670 – 173783	atu6154 / atu6155	-	113	113
Ti3	190702 – 190613	-	atu6175	89	120
Ti4	194399 – 194505	-	atu6979	106	100

sRNAs are named after their location on the genome. Position on the genome, flanking genes or antisense transcript and sizes estimated from dRNA-seq data and from RNA gel blots are listed.