. 2012 Jun 12;8(6):838–858. doi: 10.7150/ijbs.4403

Table 1.

Association of significant SNP markers with 29 economically important traits in beef and marker QTMs*.

Trait	Marker	N1	Q	N2	G	LSM±SE	P	Trait	Marker	N1	Q	N2	G	LSM±SE	P
BMS	TNF#3 A/T	645	A	91	AA	6.8787±0.2982^a	0.0016	C18:1n9	PSMG1#1 A/C	319	O	59	AA	42.0533±0.4051^ab	0.0408
				275	AT	7.3723±0.2269^a						179	AC	41.6613±0.2997^a
				279	TT	7.8107±0.2254^b						81	CC	42.5384±0.3639^b
BMS	IGF2#1 C/T	627	O	179	CC	7.1579±0.2619^a	0.0161	C18:1n9	SLC27A1#1 G/T	318	D	112	GG	41.3939±0.3434^a	0.0155
				319	CT	7.7362±0.2351^b						151	GT	42.3725±0.3033^b
				129	TT	7.5411±0.2744^ab						55	TT	42.0665±0.4189^ab
BMS	ASB3#2 C/T	640		279	CC	7.1787±0.2339^a	0.0026	C18:1n9	ABCA1#7 A/G	312	D	21	AA	40.3968±0.5986^a	0.0114
				359	CT	7.7674±0.2252^b						113	AG	42.2364±0.3162^b
				2	TT	7.7976±1.4338^ab						178	GG	42.0831±0.2829^b
								C18:1n9	SLC27A2#1 C/T	319	D	27	CC	43.1295±0.5434^a	0.0370
REA	RCAN1#5 C/T	638	D	35	CC	12.1809±0.2148^a	0.0103					153	CT	41.9958±0.3059^ab
				480	CT	12.7929±0.1056^b						139	TT	41.7072±0.3223^b
				123	TT	12.7325±0.1335^b		C18:1n9	EFEMP1#2 A/C	319	D	114	AA	42.5363±0.3410^a	0.0178
REA	CAPN12#1 I/D	631	O	67	II	12.4514±0.1690^a	0.0099					189	AC	41.6884±0.3029^b
				318	IT	12.8552±0.1136^b						16	CC	41.6262±0.7182^ab
				246	DD	12.6783±0.1192^ab		C18:1n9	TFB2M#2 C/T	310	O	93	CC	41.4395±0.3801^a	0.0365
REA	LIPE#1 C/T	638	D	26	CC	12.1830±0.2351^a	0.0177					164	CT	42.3131±0.3278^b
				390	CT	12.7352±0.1085^b						53	TT	41.8789±0.4467^ab
				222	TT	12.8310±0.1180^b		C18:1n9	DSEL#1 C/T	320	D	112	CC	42.5322±0.3452^a	0.0343
REA	CRHR1#1 A/G	633	D	177	AA	12.7084±0.1286^ab	0.0391					148	CT	41.7321±0.3142^b
				375	AG	12.8158±0.1145^a						60	TT	41.6584±0.4147^ab
				81	GG	12.4796±0.1630^b
REA	MTFR1#1 C/G	646		146	CC	12.5158±0.1446^a	0.0474	C18:1n7	APOB#2 C/T	323	O	40	CC	3.7696±0.2295^ab	0.0019
				344	CG	12.8117±0.1172^a						225	CT	4.0884±0.1738^a
				156	GG	12.8551±0.1429^a						58	TT	3.5692±0.2110^b
								C18:1n7	UTS2R#2 I/D	325	O	142	II	3.7433±0.1841^a	0.0031
BFT	ASB3#1 G/T	640	O	243	GG	0.7173±0.0198^a	0.0392					156	ID	4.1578±0.1828^b
				314	GT	0.7582±0.0189^b						27	DD	3.8438±0.2665^ab
				83	TT	0.7334±0.0260^ab		C18:1n7	TFAM#3 C/T	325	O	107	CC	3.7562±0.1917^a	0.0134
BFT	ALDH4A1#1 G/T	632		80	GG	0.7750±0.0263^a	0.0328					173	CT	4.1117±0.1819^b
				301	GT	0.7500±0.0192^a						45	TT	3.7999±0.2295^ab
				251	TT	0.7162±0.0199^a		C18:1n7	CAPN1#1 C/G	323	D	128	CC	3.8201±0.1940^a	0.0106
												161	CG	3.9166±0.1847^a
QG	RCAN1#5 C/T	511	D	30	CC	13.0899±0.1661^a	0.0000					34	GG	4.4702±0.2481^b
				385	CT	13.8295±0.0728^b		C18:1n7	CAPN1#5 A/G	325	D	50	AA	4.3967±0.2243^a	0.0021
				96	TT	13.7488±0.1073^b						169	AG	3.9420±0.1840^b
QG	ALDH4A1#1 G/T	508	D	58	GG	13.4378±0.1277^a	0.0115					106	GG	3.7302±0.1974^b
				238	GT	13.8031±0.0801^b		C18:1n7	CRH#3 C/G	323		34	CC	3.6775±0.2460^a	0.0177
				212	TT	13.8215±0.0837^b						188	CG	4.1050±0.1834^a
QG	LRPAP1#1 C/T	514	D	81	CC	13.4919±0.1144^a	0.0113					101	GG	3.7931±0.1969^a
				222	CT	13.7745±0.0822^b		C18:1n7	SKIV2L#1 C/T	324		84	CC	3.8167±0.2103^a	0.0381
				211	TT	13.8506±0.0838^b						157	CT	3.8763±0.1857^a
QG	CAST#2 C/T	518	D	39	CC	13.4334±0.1500^a	0.0394					83	TT	4.2204±0.2047^a
				235	CT	13.8189±0.0828^b
				244	TT	13.7859±0.0826^ab		C18:2n6t	LIPE#1 C/T	318	A	15	CC	0.3460±0.0221^ab	0.0131
QG	FTO#3 C/T	509	O	186	CC	13.6188±0.0869^a	0.0021					191	CT	0.3714±0.0097^a
				259	CT	13.9097±0.0812^b						112	TT	0.3946±0.0106^b
				64	TT	13.6592±0.1277^ab		C18:2n6t	SCP2#1 A/G	318		14	AA	0.3443±0.0226^a	0.0466
QG	TNF#3 A/T	517	D	66	AA	13.4994±0.1190^a	0.0290					139	AG	0.3899±0.0111^a
				217	AT	13.7684±0.0797^ab						165	GG	0.3739±0.0106^a
				234	TT	13.8300±0.0779^b
QG	DHCR7#2 A/G	523	D	216	AA	13.8381±0.0808^a	0.0001	MUFA	PSMG1#1 A/C	318	O	60	AA	51.3753±0.4676^ab	0.0157
				289	AG	13.7733±0.0743^a						177	AC	50.8816±0.3788^a
				18	GG	12.9737±0.1990^b						81	CC	51.9133±0.4335^b
								MUFA	SLC27A1#1 G/T	317	D	109	GG	50.5009±0.3992^a	0.0027
YG	HMGCL#1 A/G	641	D	16	AA	4.0484±0.2350^ab	0.0196					153	GT	51.7196±0.3588^b
				301	AG	3.8261±0.0876^a						55	TT	51.5203±0.4676^ab
				324	GG	3.6885±0.0852^b		MUFA	ABCA1#7 A/G	312	D	22	AA	49.6734±0.6498^a	0.0077
YG	APOB#2 C/T	634	D	84	CC	3.5764±0.1027^a	0.0105					112	AG	51.6650±0.4002^b
				449	CT	3.7860±0.0859^b						178	GG	51.3120±0.3709^b
				101	TT	3.8064±0.1161^ab		MUFA	SLC27A2#1 C/T	318	D	27	CC	53.0719±0.5922^a	0.0006
YG	ASB3#1 G/T	634	D	240	GG	3.6712±0.0903^a	0.0325					151	CT	51.2234±0.3751^b
				313	GT	3.8266±0.0888^b						140	TT	50.8665±0.3894^b
				81	TT	3.7972±0.1118^ab		MUFA	DSEL#1 C/T	319	D	109	CC	51.9722±0.4281^a	0.0073
YG	CAPN5#3 A/G	622	D	328	AA	3.8131±0.0878^a	0.0088					150	CT	50.9171±0.3970^b
				248	AG	3.7282±0.0893^ab						60	TT	51.0153±0.4871^ab
				46	GG	3.5111±0.1161^b
YG	FTO#8 C/T	633	O	301	CC	3.8695±0.0911^a	0.0045	PUFA	ABCA1#7 A/G	313	O	21	AA	2.2766±0.1008^ab	0.0437
				289	CT	3.6587±0.0882^b						113	AG	2.2167±0.0640^a
				43	TT	3.7323±0.1290^ab						179	GG	2.3371±0.0597^b
YG	TNF#3 A/T	638	O	91	AA	3.7494±0.1172^ab	0.0010	PUFA	SLC27A2#1 C/T	320	A	27	CC	2.1306±0.0912^a	0.0074
				270	AT	3.8957±0.0961^a						151	CT	2.2743±0.0598^ab
				277	TT	3.6626±0.0939^b						142	TT	2.3712±0.0617^b
YG	TFAM#3 C/T	620	D	223	CC	3.7472±0.0912^a	0.0211	PUFA	CRHR1#1 A/G	320	O	92	AA	2.2585±0.0673^ab	0.0138
				314	CT	3.7378±0.0886^a						185	AG	2.3356±0.0606^a
				84	TT	4.0105±0.1219^b						43	GG	2.1458±0.0817^b
YG	LIPE#1 C/T	636		26	CC	4.1643±0.2051^a	0.0373	PUFA	SKIV2L#1 C/T	320	O	82	CC	2.1987±0.0658^a	0.0326
				387	CT	3.7795±0.0856^a						155	CT	2.3415±0.0582^b
				223	TT	3.6978±0.0897^a						83	TT	2.2875±0.0661^ab

HCW	SLC27A4#2 C/T	647	D	252	CC	878.59±13.6600^a	0.0305	SFA	SLC27A1#1 G/T	319	D	113	GG	39.5921±0.2330^a	0.0031
				315	CT	862.85±13.4855^b						152	GT	38.7575±0.2001^b
				80	TT	864.63±15.2369^ab						54	TT	38.6805±0.2996^b
HCW	TFB2M#1 C/T	641	D	238	CC	880.55±13.5547^a	0.0219	SFA	ABCA1#2 A/G	311	D	32	AA	39.8422±0.3693^a	0.0409
				301	CT	863.69±13.2943^b						159	AG	39.0961±0.2092^ab
				101	TT	864.28±14.6212^ab						120	GG	38.8307±0.2247^b
HCW	TFB2M#2 C/T	621	A	174	CC	858.94±13.6556^a	0.0238	SFA	ABCA1#7 A/G	313	D	22	AA	40.0681±0.4352^a	0.0225
				303	CT	870.08±13.1404^ab						114	AG	39.1215±0.2295^ab
				144	TT	881.75±13.8614^b						177	GG	38.8523±0.2070^b
HCW	CAPN12#1 I/D	632	A	67	II	851.09±14.4969^a	0.0319	SFA	DSEL#1 C/T	321	D	113	CC	38.5723±0.2402^a	0.0106
				318	ID	867.39±11.8914^ab						147	CT	39.2817±0.2116^b
				247	DD	877.37±12.1458^b						61	TT	39.3180±0.2928^ab
HCW	TNF#3 A/T	645	D	91	AA	877.20±14.7955^ab	0.0087	SFA	TFAM#2 C/T	321		48	CC	39.3908±0.3172^a	0.0471
				275	AT	877.88±13.1753^a						167	CT	38.7811±0.2107^a
				279	TT	858.85±13.1555^b						106	TT	39.2679±0.2393^a
HCW	APOE#4 C/T	641		35	CC	884.74±18.1782^a	0.0438
				394	CT	872.78±13.2659^a		CLA	CAST#2 C/T	318	D	24	CC	0.9573±0.0205^a	0.0446
				212	TT	859.50±13.7205^a						132	CT	0.9047±0.0104^b
												162	TT	0.9060±0.0100^ab
C14:0	CAST#2 C/T	315	D	23	CC	3.3057±0.0975^a	0.0328	CLA	TFB1M#1 G/T	323	O	29	GG	0.9139±0.0193^ab	0.0218
				132	CT	3.0755±0.0656^b						132	GT	0.8907±0.0101^a
				160	TT	3.1194±0.0650^ab						162	TT	0.9229±0.0097^b
C14:0	ABCA1#7 A/G	313	D	21	AA	3.3618±0.1024^a	0.0048	CLA	EFEMP1#2 A/C	324	D	114	AA	0.8851±0.0113^a	0.0042
				114	AG	3.1401±0.0666^ab						194	AC	0.9221±0.0096^b
				178	GG	3.0657±0.0631^b						16	CC	0.9246±0.0260^ab
C14:0	CAPN14#2 A/G	317	D	116	AA	3.2001±0.0648^a	0.0166	CLA	PLTP#2 C/T	315	O	82	CC	0.8858±0.0135^a	0.0042
				171	AG	3.0594±0.0620^b						164	CT	0.9282±0.0108^b
				30	GG	3.0849±0.0894^ab						69	TT	0.9009±0.0145^ab
C14:0	EFEMP1#2 A/C	320	A	112	AA	3.0373±0.0672^a	0.0283	CLA	DSEL#1 C/T	325	D	114	CC	0.8836±0.0109^a	0.0044
				192	AC	3.1516±0.0622^b						150	CT	0.9226±0.0096^b
				16	CC	3.2244±0.1173^ab						61	TT	0.9216±0.0139^b
C14:0	CRHR1#1 A/G	321	D	92	AA	3.1463±0.0693^a	0.0177	CLA	ABCA1#7 A/G	317		22	AA	0.9436±0.0218^a	0.0222
				185	AG	3.1372±0.0623^a						115	AG	0.9226±0.0111^a
				44	GG	2.9411±0.0864^b						180	GG	0.8959±0.0098^a
C14:0	TNF#3 A/T	320	D	45	AA	3.2604±0.0859^a	0.0100	CLA	ASB3#1 G/T	324		128	GG	0.8916±0.0105^a	0.0459
				131	AT	3.0575±0.0670^b						154	GT	0.9196±0.0097^a
				144	TT	3.1329±0.0671^ab						42	TT	0.9213±0.0163^a
C14:0	CAPN1#3 A/G	321	O	29	AA	3.1482±0.0943^ab	0.0070
				159	AG	3.0336±0.0665^a		TRANS	ABCA1#7 A/G	313	O	21	AA	6.0375±0.3813^ab	0.0251
				133	GG	3.2002±0.0677^b						114	AG	5.3747±0.2552^a
C14:0	APOB#2 C/T	319		40	CC	3.0372±0.0834^a	0.0362					178	GG	5.8040±0.2434^b
				221	CT	3.0915±0.0614^a		TRANS	SLC27A2#1 C/T	319	D	27	CC	4.9060±0.3362^a	0.0040
				58	TT	3.2444±0.0791^a						151	CT	5.6774±0.2302^b
												141	TT	5.9110±0.2376^b
C14:1n5	ALDH4A1#1 G/T	313	D	47	GG	1.0792±0.1100^a	0.0387	TRANS	FADS2#1 A/G	320	D	115	AA	5.4532±0.2449^a	0.0008
				149	GT	1.2297±0.1012^b						167	AG	5.6051±0.2289^a
				117	TT	1.2131±0.1023^ab						38	GG	6.4917±0.3106^b
C14:1n5	PCSK1#2 C/T	322	O	75	CC	1.1089±0.1014^a	0.0450	TRANS	SLC27A1#1 G/T	318		112	GG	5.8670±0.2590^a	0.0492
				194	CT	1.2299±0.0963^b						151	GT	5.4910±0.2416^a
				53	TT	1.1715±0.1050^ab						55	TT	5.9031±0.2904^a
C14:1n5	ABCA1#7 A/G	316	D	22	AA	1.2685±0.1214^ab	0.0066	TRANS	APOA1#2 A/G	311		3	AA	7.2593±0.8453^a	0.0308
				115	AG	1.2682±0.1001^a						94	AG	5.4303±0.2611^a
				179	GG	1.1374±0.0980^b						214	GG	5.7376±0.2382^a
C14:1n5	SLC27A2#1 C/T	323	D	27	CC	1.3524±0.1145^a	0.0153
				153	CT	1.1987±0.0960^ab		OMEGA-3	CRH#3 C/G	315	O	30	CC	0.1316±0.0090^a	0.0200
				143	TT	1.1385±0.0971^b						185	CG	0.1115±0.0061^b
C14:1n5	ACSL5#1 C/T	323	O	123	CC	1.1735±0.0990^ab	0.0413					100	GG	0.1207±0.0067^ab
				149	CT	1.2390±0.0982^a		OMEGA-3	IGF2#1 C/T	310	O	82	CC	0.1268±0.0072^a	0.0347
				51	TT	1.1005±0.1065^b						173	CT	0.1121±0.0062^b
C14:1n5	SCD1#2 A/G	314		14	AA	1.0891±0.1357^a	0.0463					55	TT	0.1191±0.0077^ab
				134	AG	1.1478±0.1001^a		OMEGA-3	TFB2M#1 C/T	317		157	CC	0.1115±0.0066^a	0.0179
				166	GG	1.2442±0.0994^a						108	CT	0.1227±0.0061^a
												52	TT	0.1072±0.0079^a
C15:0	SLC27A1#1 G/T	321	D	112	GG	0.7055±0.0198^a	0.0195
				154	GT	0.6708±0.0188^b		OMEGA-6	ABCA1#7 A/G	315	O	21	AA	2.1607±0.1009^ab	0.0466
				55	TT	0.6718±0.0216^ab						114	AG	2.1045±0.0648^a
												180	GG	2.2222±0.0607^b
C15:1n5	TFB2M#1 C/T	321	D	110	CC	0.0939±0.0026^a	0.0109	OMEGA-6	SLC27A2#1 C/T	322	A	27	CC	2.0325±0.0916^a	0.0121
				158	CT	0.1014±0.0023^b						152	CT	2.1577±0.0610^ab
				53	TT	0.1032±0.0035^b						143	TT	2.2533±0.0627^b
C15:1n5	TNF#3 A/T	320	D	45	AA	0.0964±0.0036^ab	0.0156	OMEGA-6	CRHR1#1 A/G	322	O	93	AA	2.1480±0.0679^ab	0.0253
				130	AT	0.0953±0.0023^a						185	AG	2.2158±0.0616^a
				145	TT	0.1029±0.0023^b						44	GG	2.0416±0.0816^b
								OMEGA-6	SKIV2L#1 C/T	322	D	83	CC	2.0891±0.0667^a	0.0436
C16:0	ABCA1#7 A/G	317	D	22	AA	25.0129±0.4259^a	0.0025					156	CT	2.2233±0.0596^b
				115	AG	24.1660±0.2849^ab						83	TT	2.1710±0.0672^ab
				180	GG	23.7658±0.2708^b		OMEGA-6	RCAN1#6 C/T	321		14	CC	1.9818±0.1195^a	0.0257
C16:0	PLTP#2 C/T	315	O	82	CC	23.8683±0.3162^ab	0.0055					249	CT	2.2078±0.0567^a
				164	CT	24.2921±0.2838^a						58	TT	2.0942±0.0729^a
				69	TT	23.5817±0.3302^b
C16:0	TNF#3 A/T	324	D	45	AA	24.7247±0.3603^a	0.0043	OMEGA-6:3	CRH#3 C/G	315	D	33	CC	16.6578±1.5585^a	0.0054
				132	AT	23.7729±0.2772^b						182	CG	21.0695±1.0786^b
				147	TT	24.0488±0.2768^ab						100	GG	20.2472±1.1780^b
C16:0	LRPAP1#1 C/T	321		45	CC	23.9383±0.3487^a	0.0450	OMEGA-6:3	TFB2M#1 C/T	317	O	109	CC	21.0956±1.1514^ab	0.0015
				152	CT	24.2678±0.2752^a						156	CT	19.0225±1.0867^a
				124	TT	23.7613±0.2793^a						52	TT	22.8876±1.3706^b
								OMEGA-6:3	PNPLA2#1 C/G	315	D	83	CC	20.0462±1.1625^ab	0.0272
C16:1n7	ABCA1#7 A/G	317	A	22	AA	3.0133±0.0670^a	0.0162					163	CG	19.6211±1.0328^a
				115	AG	2.9232±0.0338^ab						67	GG	22.3840±1.2291^b
				180	GG	2.8456±0.0299^b		OMEGA-6:3	CRH#2 A/G	316		13	AA	20.6608±2.1540^ab	0.0336
C16:1n7	ASB3#1 G/T	324	D	128	GG	2.8265±0.0322^a	0.0266					100	AG	21.8716±1.1010^a
				154	GT	2.9231±0.0293^b						203	GG	19.6002±0.9859^b
				42	TT	2.9165±0.0498^ab		OMEGA-6:3	IGF2#1 C/T	309		85	CC	19.1924±1.1687^a	0.0411
C16:1n7	EFEMP1#2 A/C	324	D	114	AA	2.8193±0.0340^a	0.0121					169	CT	21.2254±1.0191^a
				194	AC	2.9221±0.0287^b						55	TT	19.0672±1.2844^a
				16	CC	2.9301±0.0804^ab
C16:1n7	PLTP#2 C/T	315	O	82	CC	2.8119±0.0406^a	0.0012	DELTA9	SLC27A2#1 C/T	320	D	26	CC	83.2946±0.7098^a	0.0189
				164	CT	2.9526±0.0322^b						152	CT	81.9178±0.4681^ab
				69	TT	2.8539±0.0440^ab						142	TT	81.4771±0.4825^b
C16:1n7	DSEL#1 C/T	325	D	114	CC	2.8138±0.0336^a	0.0112	DELTA9	TFB2M#1 C/T	321	D	110	CC	82.5440±0.5159^a	0.0255
				150	CT	2.9224±0.0294^b						159	CT	81.5615±0.4769^b
				61	TT	2.9243±0.0428^ab						52	TT	81.4223±0.6053^ab
C16:1n7	TFB1M#1 G/T	323		29	GG	2.9296±0.0596^a	0.0337	DELTA9	GNG3#2 G/T	313	A	24	GG	80.7177±0.7156^a	0.0115
				132	GT	2.8319±0.0307^a						140	GT	81.4788±0.4522^ab
				162	TT	2.9197±0.0298^a						149	TT	82.3947±0.4532^b
								DELTA9	SLC27A1#1 G/T	319		113	GG	81.2776±0.4968^a	0.0482
C17:0	ABCA1#7 A/G	312	D	22	AA	1.7990±0.0850^a	0.0326					152	GT	82.0319±0.4607^a
				114	AG	1.9288±0.0637^ab						54	TT	82.5316±0.5732^a
				176	GG	1.9730±0.0616^b		DELTA9	APOE#5 A/G	313		29	AA	82.4964±0.6825^a	0.0316
C17:0	CAPN12#1 I/D	316	D	35	II	2.1017±0.0766^a	0.0049					181	AG	81.4557±0.4722^a
				166	ID	1.9263±0.0599^b						103	GG	82.3526±0.5136^a
				115	DD	1.9058±0.0626^b
C17:0	FADS2#1 A/G	320	D	114	AA	1.9479±0.0631^ab	0.0253	ELONGASE	ABCA1#7 A/G	317	D	22	AA	63.7281±0.6657^a	0.0020
				169	AG	1.9128±0.0602^a						115	AG	65.3718±0.4377^b
				37	GG	2.0617±0.0749^b						180	GG	65.8435±0.4146^b
C17:0	SCD#2 A/G	310		14	AA	2.1306±0.0976^a	0.0389	ELONGASE	EFEMP1#2 A/C	324	D	114	AA	66.0452±0.4422^a	0.0210
				132	AG	1.9519±0.0623^ab						194	AC	65.2039±0.4098^b
				164	GG	1.9152±0.0614^b						16	CC	65.2053±0.7816^ab
								ELONGASE	PLTP#2 C/T	315	O	82	CC	65.7275±0.4940^ab	0.0044
C17:1n7	FABP4#1 A/G	317	O	60	AA	1.3475±0.0470^a	0.0415					164	CT	65.0435±0.4422^a
				174	AG	1.2727±0.0416^b						69	TT	66.1899±0.5160^b
				83	GG	1.3054±0.0445^ab		ELONGASE	TNF#3 A/T	324	D	45	AA	64.5268±0.5653^a	0.0192
C17:1n7	CAPN12#1 I/D	320	D	35	II	1.3838±0.0527^a	0.0209					132	AT	65.8124±0.4316^b
				168	ID	1.2905±0.0416^b						147	TT	65.4346±0.4309^ab
				117	DD	1.2681±0.0433^b		ELONGASE	TFB1M#1 G/T	323		29	GG	65.2667±0.6134^a	0.0440
C17:1n7	FADS2#1 A/G	324	D	115	AA	1.2992±0.0433^ab	0.0206					132	GT	65.9508±0.4165^a
				171	AG	1.2735±0.0414^a						162	TT	65.1806±0.4165^a
				38	GG	1.3759±0.0511^b		ELONGASE	DSEL#1 C/T	325		114	CC	66.0345±0.4416^a	0.0420
C17:1n7	SCD#2 A/G	314		14	AA	1.4237±0.0666^a	0.0168					150	CT	65.2389±0.4138^a
				135	AG	1.3095±0.0432^ab						61	TT	65.1955±0.4981^a
				165	GG	1.2677±0.0427^b
								FAT	PCSK1#2 C/T	319	D	75	CC	81.0719±2.4719^ab	0.0325
C18:1n7t	ABCA1#2 A/G	310	D	30	AA	4.6378±0.3285^a	0.0250					191	CT	80.3735±2.4141^a
				162	AG	5.1515±0.2346^ab						53	TT	82.8640±2.5188^b
				118	GG	5.4210±0.2413^b		FAT	SLC27A2#1 C/T	320	D	26	CC	78.1833±2.6485^a	0.0333
C18:1n7t	ABCA1#7 A/G	312	O	20	AA	5.4669±0.3725^ab	0.0398					153	CT	80.8826±2.4034^ab
				114	AG	4.9779±0.2441^a						141	TT	81.6011±2.4143^b
				178	GG	5.3914±0.2327^b		FAT	CAPN1#2 C/T	312	D	141	CC	80.2166±2.4515^a	0.0117
C18:1n7t	SLC27A2#1 C/T	318	D	27	CC	4.5148±0.3209^a	0.0054					145	CT	81.4189±2.4505^ab
				151	CT	5.2744±0.2178^b						26	TT	83.9212±2.6843^b
				140	TT	5.4578±0.2256^b		FAT	PNPLA2#3 C/T	317	D	64	CC	82.8295±2.5200^a	0.0128
C18:1n7t	FADS2#1 A/G	319	D	114	AA	5.0141±0.2305^a	0.0003					160	CT	80.6430±2.4508^b
				167	AG	5.1991±0.2142^a						93	TT	79.9845±2.4870^b
				38	GG	6.0840±0.2936^b		FAT	TNF#5 C/T	319		197	CC	81.0481±2.4115^a	0.0265
C18:1n7t	APOA1#2 A/G	310		3	AA	6.8097±0.8099^a	0.0246					120	CT	80.9194±2.4464^a
				94	AG	5.0101±0.2476^a						2	TT	69.2402±4.9516^b
				213	GG	5.3177±0.2255^a		FAT	CAPN1#1 C/G	319		127	CC	81.9978±2.4602^a	0.0459
												158	CG	80.4552±2.4445^a
												34	GG	79.6255±2.6184^a

*The different lowercase letters between different genotypes within the same marker indicate that the difference reached the significance level of P<0.05, while the same letters between genotypes show no significant difference (P>0.05). A, D and O represent additive, dominant and overdominant effects in the QTMs analysis respectively. The markers that do not show any significance among different genotypes after Bonferroni correction are underlined. The significant markers that have ≤ 15 animals in each genotype group are italicized.

Q = QTMs; G=Genotypes