Table 1.

Details of simulations used to simulate the epidemics in figure 2.

R	k	total generations	simulation length (day)	sequences in final generation
1.5	0.1	24	62.4	81 591
1.5	1	33	85.8	97 258
1.5	10	28	72.8	74 607
2	0.1	16	41.6	121 802
2	1	18	46.8	119 088
2	10	17	44.2	109 924
2.5	0.1	12	31.2	87 917
2.5	1	15	39	102 563
2.5	10	14	36.4	105 127