Table 2. FISH-validated genes required for normal somatic homolog pairing.
Gene Targeted | Gene Function | Validation Amplicon | % Paired Nucleia | Nuclei Scored | Nuclear Sizeb | % Nuclei > 4 Signalsc |
---|---|---|---|---|---|---|
Control | — | (water) | 66.8 | 4498 | 2537 ± 892 | 0.002 |
β-Tub56D | Cytoskeleton | DRSC33236 | 47.9 | 361 | 2943 ± 1330 | 1.1 |
CG31635 | Unknown | DRSC31568 | 54 | 274 | 2573 ± 787 | 0.36 |
CG5844 | Fatty acid metabolism | DRSC30977 | 52.3 | 151 | 2417 ± 925 | 0 |
chb | Microtubule binding | DRSC36464 | 57.7 | 345 | 2643 ± 832 | 0.29 |
feo | Cytokinesis | DRSC23773 | 53.1 | 241 | 2892 ± 1598 | 3.7 |
geminin | Regulation of DNA replication | DRSC33311 | 56.3 | 190 | 3879 ± 1886 | 2.1 |
His3 | Core histone | DRSC40904 | 57.6 | 184 | 2848 ± 1041 | 0.54 |
ial-1 | Aurora B kinase; cytokinesis | DRSC36311 | 45.4 | 207 | 3360 ± 2048 | 6.3 |
Incenp | Inner centromere protein | DRSC39343 | 46.6 | 161 | 3637 ± 2297 | 9.9 |
Klp61F | Mitotic kinesin | DRSC30823 | 31.7 | 123 | 3727 ± 1967 | 13.9 |
Myb | Oncogene | DRSC31099 | 39.7 | 209 | 3315 ± 1843 | 12 |
pav | Kinesin; cytokinesis | DRSC33333 | 33.8 | 136 | 2972 ± 1903 | 8.8 |
pbl | Cytokinesis | DRSC33335 | 41.5 | 299 | 2776 ± 1229 | 3.7 |
polo | Kinetechore | DRSC34463 | 46.7 | 244 | 2628 ± 1180 | 2 |
scra | Contractile ring | DRSC07679 | 41.4 | 280 | 3313 ± 1807 | 8.2 |
Sse | Mitotic chromosome segregation | DRSC34476 | 53.6 | 308 | 2777 ± 1229 | 0.32 |
tsr | Actin binding protein | DRSC31277 | 55.6 | 144 | 2289 ± 1256 | 4.1 |
Percentage of nuclei with a single FISH signal for the 359 bp repeat.
Nuclear sizes were determined from images representing flattened z-stacks and are presented as mean areas of DAPI staining plus or minus the standard deviation. Units are arbitrary.
Percentage of nuclei with greater than four FISH signals for the 359 bp repeat, which are assumed to be polyploid/aneuploid.