Table 2. Recombination rate between SNP marker pairs on individual contigs.
| LG | Marker 1 | Marker 2 | JoinMap Distance (cM) | Physical Distance (Kb) | Number of Lines of Each Genotype (Marker 1/Marker 2) | Calculated Genetic Distance (cM)b | Rec. Rate (cM/Mb)c | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AA/AA | BB/BB | AB/AB | AA/BB | BB/AA | AB/AA | AB/BB | AA/AB | BB/AB | Ua | |||||||
| 1 | C168.5288 | C168.146718 | 10.5 | 141.4 | 62 | 78 | 5 | 14 | 6 | 3 | 5 | 5 | 5 | 0 | 15.8 | 111.7 |
| 1 | C53.13503 | C53.123334 | 0.2 | 109.8 | 79 | 89 | 0 | 1 | 1 | 5 | 1 | 2 | 5 | 0 | 4.6 | 41.9 |
| 3 | C138.53755 | C138.105743 | 7.2 | 51.9 | 66 | 88 | 0 | 6 | 7 | 3 | 3 | 1 | 9 | 0 | 11.4 | 264.0 |
| 4 | C42.52764 | C42.157061 | 1.8 | 104.3 | 63 | 110 | 1 | 3 | 1 | 0 | 2 | 3 | 0 | 0 | 3.6 | 34.6 |
| 6 | C147.37305 | C147.140245 | 1.0 | 102.9 | 124 | 47 | 0 | 2 | 0 | 0 | 6 | 4 | 0 | 0 | 3.8 | 36.9 |
| 6 | C134.55910 | C134.136730 | 4.9 | 80.8 | 118 | 44 | 6 | 4 | 3 | 3 | 0 | 2 | 3 | 0 | 6.0 | 74.2 |
| 6 | C160.52553 | C160.82675 | 7.0 | 30.1 | 90 | 58 | 3 | 11 | 1 | 3 | 2 | 6 | 5 | 4 | 11.2 | 372.1 |
| 8 | C34.32670 | C34.55296 | 4.9 | 22.6 | 79 | 83 | 0 | 9 | 0 | 1 | 6 | 5 | 0 | 0 | 8.2 | 362.9 |
| 8 | C41.17536 | C41.79152 | 0.6 | 61.6 | 78 | 90 | 1 | 3 | 0 | 7 | 2 | 0 | 2 | 0 | 4.6 | 74.7 |
| 10 | C210.97763 | C210.146222 | 7.2 | 48.4 | 72 | 87 | 9 | 10 | 3 | 0 | 0 | 0 | 2 | 0 | 8.2 | 169.4 |
| 11 | C88.4336 | C88.334290 | 33.3 | 329.9 | 39 | 74 | 1 | 12 | 43 | 3 | 3 | 1 | 7 | 0 | 33.9 | 103.0 |
| 13 | C107.8086 | C107.54888 | 5.7 | 46.8 | 58 | 100 | 1 | 7 | 2 | 7 | 1 | 0 | 7 | 0 | 9.0 | 192.3 |
| 13 | C353.66743 | C353.103086 | 1.2 | 36.3 | 67 | 105 | 0 | 4 | 0 | 0 | 4 | 2 | 0 | 1 | 3.8 | 104.7 |
| 13 | C333.399 | C333.95597 | 0.4 | 95.1 | 68 | 90 | 1 | 0 | 1 | 8 | 6 | 4 | 5 | 0 | 6.8 | 71.5 |
| 13 | C163.45265 | C163.146394 | 2.4 | 101.1 | 84 | 75 | 7 | 4 | 0 | 2 | 3 | 1 | 7 | 0 | 5.7 | 56.4 |
| 14 | C357.12993 | C357.81930 | 2.6 | 68.9 | 71 | 99 | 0 | 0 | 5 | 6 | 0 | 0 | 2 | 0 | 4.9 | 71.1 |
| 15 | C9.7090 | C9.34032 | 1.0 | 26.9 | 67 | 97 | 2 | 2 | 1 | 5 | 1 | 0 | 7 | 1 | 5.2 | 193.3 |
| 15 | C7.28131 | C7.117426 | 13.9 | 89.2 | 60 | 75 | 7 | 7 | 11 | 3 | 7 | 5 | 8 | 0 | 16.1 | 180.5 |
| 15 | C2.15780 | C2.61906 | 8.0 | 46.1 | 74 | 81 | 2 | 9 | 1 | 1 | 8 | 4 | 3 | 0 | 9.8 | 212.6 |
| 16 | C309.87693 | C309.131622 | 1.2 | 43.9 | 62 | 111 | 1 | 0 | 3 | 0 | 0 | 1 | 4 | 1 | 3.0 | 68.3 |
| 16 | C118.75881 | C118.165879 | 7.0 | 89.9 | 50 | 107 | 4 | 6 | 7 | 1 | 5 | 3 | 0 | 0 | 9.6 | 106.8 |
| 18 | C515.11261 | C515.97333 | 3.7 | 86.1 | 50 | 111 | 2 | 3 | 2 | 6 | 1 | 3 | 4 | 1 | 6.5 | 75.5 |
a
Number of individuals for which marker genotypes were not available.
b
Genetic distance estimates derived by calculating the percent recombinants in the F2 lines.
c
The recombination rate shown uses the calculated values for genetic distance.