Table II. Comparison of 2,940 genes having new experimental GO-BP annotations (of which 1,460 are present in modules) with the module-based function predictions.
| Genes | Unknowna |
Unknown Experimental BPb |
Other Experimental BPc |
Total |
||||
|---|---|---|---|---|---|---|---|---|
| No. Predicted | No. Confirmedd | No. Predicted | No. Confirmed | No. Predicted | No. Confirmed | No. Predicted | No. Confirmed | |
| All Genese | 197 | 75 (38.1) | 255 | 108 (42.4) | 1,008 | 251 (24.9) | 1,460 | 434 (29.7) |
| Conserved | 166 | 65 (39.2) | 195 | 80 (41) | 871 | 215 (24.7) | 1,232 | 360 (29.2) |
| Not conserved | 48 | 10 (20.8) | 83 | 31 (37.3) | 315 | 52 (16.5) | 446 | 93 (20.9) |
a
No GO information from any hierarchy in the input data.
c
Nonelectronic GO information is available in the BP hierarchy, which is not linked to the new experimental association.
d
Numbers in parentheses represent percentages of confirmed genes (number confirmed/number predicted).
e
Genes that were present in both conserved and nonconserved modules could gain a prediction by both. The total of genes in conserved and nonconserved modules is the set of unique genes from these two sets.