Table 3.
Predicted subcellular localization for alkaline phosphatase in eukaryotic phytoplankton using Yloc, Euk-mPLoc2.0, WoLF PSORT, and CELLO computational models.
| Extracellular space | Cell wall | Plasma membrane | Cytoplasm | Nucleus | Mitochondrion | Chloroplast | Golgi apparatus | Endoplasmic reticulum | Peroxisome | Vacuole | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| PhoA-like | |||||||||||
| “Alexandrium catenella” JQ806383 | 2 | 2 | |||||||||
| Amphidinium carterae ADT91623 | 2 | 1 | 1 | 1 | |||||||
| Karenia brevis JQ670749 | 3 | 1 | 1 | 1 | 1 | 1 | 1 | ||||
| Phaeodactylum tricornutum XP_002182197.1 | 3 | 2 | 1 | 1 | |||||||
| Thalassiosira pseudonana jgi|Thaps3|1179|jgi|Thaps3|1179|fgenesh1_pg.C_chr_1000313:22-645 | 1 | 3 | 1 | 1 | 1 | ||||||
| Aureococcus anophagefferens jgi|Auran1||scaffold_13:864419-866137_putative | 1 | 3 | 1 | 1 | |||||||
| Emiliania huxleyi jgi|Emihu1|444279|estExtDG_fgenesh_newKGs_kg.C_3060016:21-652 | 3 | 2 | |||||||||
| Chlamydomonas reinhardtii Chlre_XP_001702318.1 | 2 | 2 | 1 | 1 | 1 | 1 | |||||
| Volvox carteri f. nagariensis Volca_XP_002958226.1 | 2 | 1 | 1 | 1 | |||||||
| PhoX like | |||||||||||
| Chlamydomonas reinhardtii XP_001703098* | 2 | 2 | 1 | 1 | |||||||
| Volvox carteri CAA10030* | 2 | 2 | |||||||||
| Other types | |||||||||||
| Emiliania huxleyi ABI51308* | 2 | 2 | 1 |
Shade darkness denotes the number of models that support the prediction, from highest (darkest = 3) to lowest (lightest = 1).
*APs that have been previously characterized. The rest of the sequences (except Dino-APs) are tblastn hits using Dino-APs as query.