Table 1. Classification and general features of S. plymuthica AS12 according to MIGS recommendations [14].
MIGS ID | Property | Term | Evidence codea |
---|---|---|---|
Current classification | Domain Bacteria | TAS [15] | |
Phylum Proteobacteria | TAS [16] | ||
Class Gammaproteobacteria | TAS [17,18] | ||
Order “Enterobacteriales” | TAS [19] | ||
Family Enterobacteriaceae | TAS [20-22] | ||
Genus Serratia | TAS [20,23,24] | ||
Species Serratia plymuthica | TAS [20,25] | ||
Strain AS12 | IDA | ||
Gram stain | Negative | IDA | |
Cell shape | Rod-shaped | IDA | |
Motility | Motile | IDA | |
Sporulation | Non-sporulating | IDA | |
Temperature range | Mesophilic, 4 – 40°C | IDA | |
Optimum temperature | 28°C | IDA | |
Carbon source | Glucose, sucrose, fructose, succinate, trehalose, mannitol, inositol, arabinose | IDA | |
Energy metabolism | Chemoorganotrophic | IDA | |
MIGS-6 | Habitat | Rapeseed roots | IDA |
MIGS-6.3 | Salinity | Medium | IDA |
MIGS-22 | Oxygen | Facultative | IDA |
MIGS-15 | Biotic relationship | Endophyte | TAS [5] |
MIGS-14 | Pathogenicity | None | NAS |
Biosafety level | 1+ | TAS [26] | |
MIGS-4 | Geographic location | Uppsala, Sweden | NAS |
MIGS-5 | Sample collection time | Summer 1998 | NAS |
MIGS-4.1 | Latitude | 59.8 | NAS |
MIGS-4.2 | Longitude | 17.65 | NAS |
MIGS-4.3 | Depth | 0.1 m | NAS |
MIGS-4.4 | Altitude | 24-25 m | NAS |
a) Evidence codes - IDA: Inferred from Direct Assay; TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [27]. If the evidence code is IDA, then the property should have been directly observed, for the purpose of this specific publication, for a live isolate by one of the authors, or an expert or reputable institution mentioned in the acknowledgements.