Table 1.
Annotations stored in the MicrobeDB database
| Table/objecta | Field descriptionsa | Example |
|---|---|---|
| Genome project | Organism name | Pseudomonas aeruginosa LESB58 |
| NCBI taxon ID | 557722 | |
| Genome size (Mb) | 6.6 | |
| Pathogenic in | Human | |
| GC % | 66.3 | |
| Oxygen requirements | Aerobic | |
| Replicon | Replicon type | Chromosome |
| Accession (RefSeq) | NC_011770 | |
| Replicon size (bp) | 6601757 | |
| Number of genes | 6027 | |
| Replicon sequence | TTTAAAGAG… | |
| Gene | Gene type | CDS |
| Locus ID | PLES_00001 | |
| Start position | 483 | |
| End position | 2027 | |
| Gene name | dnaA | |
| Product | chromosomal replication initiation | |
| DNA sequence | GTGTCCGT… | |
| Protein sequence | MSVELWQQ… | |
| Version | Download date | 2011-12-17 |
| Flat file directory | /share/genomes/2011-12-17/ | |
| Used by | Morgan, Matthew |
aNot all fields and tables in MicrobeDB are listed.