Skip to main content
. 2012 Jul;191(3):865–881. doi: 10.1534/genetics.112.140749

Table 2 . Summary of the SNPs detected by the different approaches.

BayeScan Annotation
SNP Clinality: R2 MC sampling: no. SNPs affecting the SNP Affected by Log10(P.O.) FST Bayenv BF AA change Nucleotide
PaPHYN_RIII185 0.256 25 7 −0.360 0.043 0.710
PaPHYN_RIII88 0.510 0 12 −0.427 0.051 4.276
PaPHYO_RIII510 0.213 33 5 −0.353 0.054 1.938
PaPHYP_RIII274 0.404 0 14 2.743 0.139** 25.175**
PaPHYP_RIII76 0.408 1 10 −0.409 0.045 1.879
PaMFTL1_1050 0.316 23 9 2.467 0.129** 5.489*
PaMFTL1_2091 0.383 3 11 2.013 0.127** 11.692**
PaMFTL1_2136 — — — 0.126 0.072 5.813*
PaMFTL1_2215 0.285 31 9 −0.492 0.048 1.263
PaMFTL1_3441 0.359 18 7 1.788 0.122** 12.817**
PaMFTL1_3658 0.555 0 12 0.333 0.080 6.414*
PaMFTL1_802 — — — 1.469 0.127* 6.540*
PaFTL2pr_1560 0.419 6 9 −0.417 0.050 0.617
PaFTL2pr_1824 0.493 0 15 −0.347 0.053 3.300
PaFTL2pr_1951 0.641 0 14 1.540 0.121** 18.346**
PaFTL2pr_2173 0.459 6 13 0.850 0.101* 5.254 *
PaFTL2pr_2509 0.441 2 13 1.915 0.133** 16.667**
PaFTL2pr_2694 0.387 7 13 1.159 0.108* 5.752*
PaFTL2pr_2790 0.396 11 12 1.284 0.112* 4.963*
PaGI_F2_9_1470 0.543 0 7 0.596 0.090 2.752 His to Tyr CAT to TAT
PaGI_F2_9_987 0.479 1 8 1000 0.170** 117.407** His to Tyr CAT to TAT
PaGI_F6_8_1111 0.244 1 6 −0.061 0.036 0.627
PaHB3_385 0.349 0 8 −0.116 0.036 0.582
PaKN2a_253 0.240 33 6 −0.411 0.043 0.557
PaKN2b_1157 — — — 0.702 0.020* 0.592
PaKN3a_211 0.377 0 12 −0.521 0.045 0.873
PaKN4b_242 0.251 33 8 0.415 0.088 47.522**
PaCCA1_1302 0.288 22 7 −0.381 0.043 0.533
PaPRR1_1992 — — — −0.529 0.047 4.884*
PaPRR1_2990 — — — −0.503 0.048 4.871*
PaPRR1_3301 — — — −0.511 0.048 4.721*
PaPRR3_F1_2570 0.380 0 7 −0.319 0.055 3.244
PaPRR3_F1_2978 — — — 1.722 0.123** 2.568
PaPRR3_F2_331 0.309 25 8 −0.504 0.048 4.213
PaPRR3_F2_481 0.354 1 8 −0.369 0.055 3.009
PaPRR7_F1_1505 0.455 0 11 −0.237 0.060 2.965
PaPRR7_F1_771 0.683 2 11 2.467 0.126** 3.842
PaPRR7_F2_417 0.230 33 7 −0.374 0.053 1.768
PaPRR7_F2_534 0.673 2 11 1000 0.138** 4.458 Ser to Thr TCT to ACT
PaPRR7_F3_104 0.689 2 11 1000 0.161** 9.906*
PaZTL_793 0.352 7 7 −0.343 0.041 0.677

See the main text for details on the different approaches. *P < 0.05; **P < 0.01. Log10(P.O.) (P.O., posterior odds): 0.5–1, substantial evidence; 1–1.5, strong evidence; 1.5–2, very strong; >2, decisive evidence. Bayes factors: 3.2–10, substantial evidence; 10–100, strong evidence; >100, decisive evidence.