Table 2.
Statistics of x-ray diffraction data and structure refinement. RMSD, root mean square deviation.
Ligand | RUC-2 (1 mM Ca/5 mM Mg) | RUC-2 (1 mM Ca/20 mM Mg) |
---|---|---|
Space group | P21212 | P21212 |
Unit cell | ||
(a, b, c) (Å) | 261.2, 145.3, 104.7 | 259.5, 145.3, 104.8 |
(α, β, γ (°) | 90, 90, 90 | 90, 90, 90 |
Wavelength (Å) | 1.0331 | 1.0332 |
Resolution (Å) | 50–2.6/2.74–2.60* | 50–2.2/2.32–2.20* |
Number of reflections (total/unique) | 743,660/118,868 | 1,236,472/199,292* |
Completeness (%) | 96.7/92.3* | 99.3/96.2* |
I/σ(I) | 6.2/1.8* | 13.4/1.6* |
Rmerge(%)† | 17.6/89.7* | 8.1/102.5* |
Rwork‡/Rfree§ | 0.179/0.222 | 0.189/0.220 |
RMSD | ||
Bond (Å) | 0.006 | 0.009 |
Angle (°) | 0.696 | 0.850 |
Ramachandran plot∥ | 95.0%/4.7%/0.3% | 95.8%/4.0%/0.2% |
Molecules per asymmetric unit | 2 | 2 |
Residues, αIIb/β3 | 1–454 (453)/1–466 (471)¶ | 1–454 (453)/1–466 (471)¶ |
Non-H atoms, protein/carbohydrate/water | 20,770/195/855 | 20,866/195/1,291 |
PDB code | 3T3M | 3T3P |
Numbers correspond to the last resolution shell.
Rmerge = ∑h∑i|Ii(h) − ⟨I(h)⟩|/∑h∑i|Ii(h), where Ii(h) and ⟨I(h)⟩ are the ith and mean measurement of the intensity of reflection h.
Rwork = ∑h||Fobs (h)| − |Fcalc (h)||/∑h|Fobs (h)|, where Fobs (h) and Fcalc (h) are the observed and calculated structure factors, respectively. No I/s cutoff was applied.
Rfree is the R value obtained for a test set of reflections consisting of a randomly selected 0.86 or 0.5% subset of data excluded from refinement.
Residues in favorable, allowed, and outlier of the Ramachandran plot as reported by MolProbity.
Numbers in parentheses correspond to chains C and D.