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. Author manuscript; available in PMC: 2012 Jul 5.
Published in final edited form as: J Proteome Res. 2011 May 11;10(6):2873–2881. doi: 10.1021/pr200200y

Table 2.

Top Canonical Pathways identified through Ingenuity Pathway Analysis

Ingenuity Canonical Pathway p-value Significant Metabolites
Alanine and Aspartate Metabolism 1.25E-06 L-alanine, pyruvic acid, L-malic acid, L-aspartic acid, 2-oxoglutaric acid, succinic acid
Glyoxylate and Dicarboxylate Metabolism 1.03E-04 pyruvic acid, L-malic acid, formic acid, 2-oxoglutaric acid, succinic acid
Phenylalanine Metabolism 2.1E-04 pyruvic acid, L-phenylalanine, benzoic acid, succinic acid
Citrate Cycle 2.57E-04 pyruvic acid, L-malic acid, 2-oxoglutaric acid, succinic acid
Aminoacyl-tRNA Biosynthesis 3.92E-04 L-alanine, L-isoleucine, L-leucine, L-phenylalanine, L-aspartic acid
Butanoate Metabolism 5.19E-04 pyruvic acid, 2-oxoglutaric acid, butyric acid, succinic acid
Valine, Leucine and Isoleucine Biosynthesis 7.35E-04 L-isoleucine, L-leucine, pyruvic acid
Glutamate Metabolism 8.14E-04 glutathione, L-malic acid, 2-oxoglutaric acid, succinic acid
Pyruvate Metabolism 0.0035 pyruvic acid, L-malic acid, formic acid
Cysteine Metabolism 0.0035 L-alanine, glutathione, pyruvic acid
Histidine Metabolism 0.00527 L-aspartic acid, 2-oxoglutaric acid,3-methylhistidine
Nitrogen Metabolism 0.0075 L-phenylalanine, formic acid, L-aspartic acid
Arginine and Proline Metabolism 0.0509 pyruvic acid, L-aspartic acid, adenine

Fisher’s exact test was used to calculate a p-value determining the probability that the association between the genes in the dataset and the canonical pathway is explained by chance alone.