Table 2.
Population | Phenotype | SNP | Gene | Function | P-valueb | SNP Type | Key Findingsc |
---|---|---|---|---|---|---|---|
European Americans | ppFEV1 | rs9787810 | PRDX5 | Peroxidase Activity | 0.0001 | 5’ region | CS: ppFEV111% lower for TT/TC vs. CC; d FS: ppFEV13% higher for TT/TC vs. CC; NS: ppFEV1 3% lower for TT/TC vs. CC. |
FEV1/FVC | rs11631100 | IDH3A | Reducing Equivalents | 0.0003 | Intron | CS: ratio higher (by 6) for AA vs. AG/GG; FS, NS: ratio does not differ by genotype. |
|
rs9787810 | PRDX5 | Peroxidase Activity | 0.0003 | 5’ region | CS: ratio lower (by 3) for TT/TC vs. CC FS, NS: ratio does not differ by genotype. |
||
African Americans | ppFEV1 | NONE | |||||
FEV1/FVC | rs8030346 | IDH2 | Reducing Equivalents | 0.0006 | Intron | CS: ratio lower (by 3) for TT and (by 4) for CT (both vs. CC); FS: ratio higher (by 7) for TT and (by 4) for CT (both vs. CC); NS: ratio does not differ by genotype |
|
rs6107100 | IDH3B | Reducing Equivalents | 0.000005 | Intron | CS: ratio higher (by 6) for AC vs. AA/CC FS, NS: ratio does not differ by genotype |
||
rs6037255 | IDH3B | Reducing Equivalents | 0.001 | Intron | CS: ratio higher (by 5) for TT/TG vs. GG FS: ratio higher (by 2) for TT/TG vs. GG NS: ratio does not differ by genotype |
||
rs7549530 | MGST3 | Glutathione S-Transferase | 0.001 | 5’ region | CS: ratio lower (by 5) for CG vs. CC/GG FS: ratio lower (by 2) for CG vs. CC/GG NS: ratio does not differ by genotype |
||
rs2042286 | SEPW1 | Selenoprotein | 0.0006 | 3’ region | CS: ratio higher (by 5) for TT/TC vs. CC FS, NS: ratio does not differ by genotype |
All results with FDR-adjusted p-value <0.05
Nominal p-values shown
Abbreviations: CS (current cigarette smokers); FS (former cigarette smokers).
Current smokers who were either homozygous (TT) or heterozygous (TC) for the minor allele had an 11% lower percent predicted FEV1 than current smokers that were homozygous for the major allele (CC).