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. Author manuscript; available in PMC: 2012 Jul 6.
Published in final edited form as: Mar Genomics. 2009 Jul 3;2(2):85–98. doi: 10.1016/j.margen.2009.03.007

Table 1.

High frequency motifs present in the HDS S regions.

Rank Forward motif Reverse motif S region frequency Adjacent S region frequency
1 AGCAAGA TCTTGCT 100 2
2 TTCABTGAA TTCAVTGAA 80 0
3 GTDGTT AACHAC 139 10
4 RCCTTT AAAGGY 100 6
5 AAGCTT AAGCTT 76 4
6 AGCAGA TCTGCT 49 0

Forward and reverse motifs refer to the forward 5′ to 3′ sequence and the reverse complementary 5′ to 3′ sequence. In the analysis we arbitrarily used the top 53 DS S regions rather than 52. Sequencekey: B = not A (i.e., C, G, or T); V = not T; D = not C; H = not G; R = A or G; Y = T or C.