Table 3. Deletions detected in the UK-1 strain by referring to the other four S. Typhimurium strains.

Id	Location	Reference strain	Configuration	Strand	Genes	Frame shift
DEL-01	184614	LT2	GATGATCT	−	yacH	YES
DEL-02	282141	LT2	GTAT	+	STMUK_0243	YES
DEL-03	314636	LT2	CAACAGGCGCTGGCG	+	STMUK_0276	NO
DEL-04	1748037	LT2	GC	−	STMUK_1666	YES
DEL-05	2979255, 2979296	LT2, D23580,and SL1344	A, ACGATAAAAAACTCTCTAT ATCCGCTCATAAAAAAAGG ATAGCTGAATATAAGTCTT TACTTAAACCGTAA	−	avrA	NO
DEL-06	3035962	LT2, 14028s, D23580,and SL1344	CTTGTTGCGGCG	−	nlpD	NO
DEL-07	3213439	LT2	ATGTCTGCGATGTCTGCG		Non-coding region
DEL-08	3784996	LT2	ATTCTCAAAC		Non-coding region
DEL-09	1185346	D23580	CGCTGGCGCTGG	+	ycdZ	NO
DEL-10	1190462	D23580	GG	+	STMUK_1115
DEL-11	2038043	D23580	GATGGCGGT	+	ompS	NO
DEL-12	2331779	D23580	GTTGATGTA	+	oafA	Promoter
DEL-13	2875055	D23580	TTGCCGCGAT	−	STMUK_2752	YES
DEL-14	3728707	D23580	GGCATCGCCAGCGCC	−	STMUK_3580	NO
DEL-15	3769415	D23580	AA		Non-coding region
DEL-16	69408	SL1344	TTA	+	citC2	NO